SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene2756

Length: 382 nt

UniGene Fasta

>biog3_v1.0_unigene2756
AATGTCCCGTGGCAGTTACTGCTCAATTCTCTGGTCACAACATATGCGCACAACTAAAGGCTCGACTTCAAGCACCCTCTGTGGTAGTTACTGCTCAATCCTCTGTTCACCCCAATTGCACACATGGGTATCTACTAAAATGTCCAGCTTTATATTGTTGAAGATGCCGAGTCGAGCTGGAATCTCTCCAAAGAAGAAATCAGGAAATTCATCATCATAAGCCTCCATATATTACAAGTATGGGTTCAGAGCAGGCCATGAAATGGACGAATCTCGTTGCAGGGCTATGGATACAAGCTTGTTCTGGCACTAACTTTGATTTCTCTGACTATTCCTCGTCTCTGAAGCAGGTTTTGCAGATCGGTCAGGTCCAACTTAACAA

Ace file of the UniGene biog3_v1.0_unigene2756

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3950	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Nuclear fusion defective 4 protein n=3 Tax=Arabidopsis RepID=F4I9E1_ARATH	-	-	2.0e-12	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	45%
Blast2go	major facilitator protein	-	-	1.8657e-14	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	chromatin assembly or disassembly	GO:0006333	Biological Process	1.8657e-14	77%
Blast2go	response to salt stress	GO:0009651	Biological Process	1.8657e-14	77%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	1.8657e-14	77%
Blast2go	DNA binding	GO:0003677	Molecular Function	1.8657e-14	77%
Blast2go	chromatin binding	GO:0003682	Molecular Function	1.8657e-14	77%
Blast2go	structural constituent of chromatin	GO:0030527	Molecular Function	1.8657e-14	77%
Blast2go	chromatin	GO:0000785	Cellular Component	1.8657e-14	77%
Blast2go	endomembrane system	GO:0012505	Cellular Component	1.8657e-14	77%
Blast2go	nucleus	GO:0005634	Cellular Component	1.8657e-14	77%
Blast2go	mitochondrion	GO:0005739	Cellular Component	1.8657e-14	77%

Source	InterPros	Term	Type	e value	Identity
Sma3	2Fe-2S ferredoxin, iron-sulphur binding site	IPR006058	-	0.0	-
Sma3	Nodulin-like	IPR010658	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRH5

Fln msg: Distance to subject end: 570 aas, your sequence is shorter than subject: 47 - 626

Fln protein: MGSEQAMKWTNLVAGLWIQACSGTNFDFSDYSSSLKQVLQIGQVQLN

Protein Length: 48

Fln nts: AATGTCCCGTGGCAGTTACTGCTCAATTCTCTGGTCACAACATATGCGCACAACTAAAGGCTCGACTTCAAGCACCCTCTGTGGTAGTTACTGCTCAATCCTCTGTTCACCCCAATTGCACACATGGGTATCTACTAAAATGTCCAGCTTTATATTGTTGAAGATGCCGAGTCGAGCTGGAATCTCTCCAAAGAAGAAATCAGGAAATTCATCATCATAAGCCTCCATATATTACAAGT_-_ATGGGTTCAGAGCAGGCCATGAAATGGACGAATCTCGTTGCAGGGCTATGGATACAAGCTTGTTCTGGCACTAACTTTGATTTCTCTGACTATTCCTCGTCTCTGAAGCAGGTTTTGCAGATCGGTCAGGTCCAACTTAACAA

Fln Alignment:

Contig2756___SMGSEQAMKWTNLVAGLWIQACSGTNFDFSDYSSSLKQVLQIGQVQLN
B8LRH5_________________SRRSGSVIKWVGFVTAIWVQAIAGNNYTFSNYSVALKSILDVNQVQLN

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
147	25		75		0.996473
148		75		25	0.996473
149			25	75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain