SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene2697

Length: 524 nt

UniGene Fasta

>biog3_v1.0_unigene2697
AATGTGTCCCCCGGACCGCTTTTCCCCGCCACATGACCGCAATTCCTATGCTCCCGCTCGCTGCAACTCCATGGCCGTCGGTCACATGCTAGCCCGGAGATTTGGCCTACCTCTACTAAACAAAGCCGTATCCAGCCGCAGGGCCATCACCACACAGAGGTTCCCCAGGGCTCGAACTGTCGCTCTAGCGGCCTGGAAGCAGGAGGTTCTATGGGCGGAGGCCCCGCTGGTGGAGGTTGAGAGGGCGGCCGAGAGCCTGTACCATGTGGTTTTAGATATCAGCGACAATCCGGATCTCATGGAGGGGCACACAACCCCAGGGCAGTTCGTGCAGGTTAGGGTTGGAGATAGCAAACCTGCGTTTCTAGCGATAGCTTCACCGCCCGCTACATCTAGCGGAGGTTCTCTAGAGTTTTTGATTAAGTATGTCGAGGGATCCACGGCAGGGTCTCTGTGCAATCTTCGTAAAGGGGATACGGTAGAGTTGAGTCAGGTTTTAGGCAATGGTTTCGATATTCGCCAAA

Ace file of the UniGene biog3_v1.0_unigene2697

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3937	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	Fruit protein PKIWI502, putative n=1 Tax=Ricinus communis RepID=B9T1V7_RICCO	-	-	65%
FL-Next	sp=Fruit protein pKIWI502; Actinidia deliciosa (Kiwi).	-	-	42%
Blast2go	fruit protein pkiwi502	-	-	76%

Source	ECs	Term	Type	e value	Identity
Blast2go	tRNA-pseudouridine synthase I.	EC:5.4.99.12	-	0.0	76%

Source	GOs	Term	Type	Identity
Blast2go	pseudouridine synthesis	GO:0001522	Biological Process	76%
Blast2go	tRNA processing	GO:0008033	Biological Process	76%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	76%
Blast2go	pseudouridine synthase activity	GO:0009982	Molecular Function	76%
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	76%
Blast2go	copper ion binding	GO:0005507	Molecular Function	76%
Blast2go	RNA binding	GO:0003723	Molecular Function	76%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	76%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	76%
Blast2go	thylakoid	GO:0009579	Cellular Component	76%

Source	InterPros	Term	Type	Identity
Sma3	Phenol hydroxylase reductase	IPR001221	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Oxidoreductase FAD/NAD(P)-binding	IPR001433	-	-
Sma3	Oxidoreductase, FAD-binding domain	IPR008333	-	-
Sma3	Ferredoxin reductase-type FAD-binding domain	IPR017927	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: sp_plants

Fln subject: P43394

Fln msg: Distance to subject end: 133 aas, atg_distance in limit (1-15): atg_distance = 3, No stop codon before M and low homology subject, your sequence is shorter than subject: 174 - 317

Fln protein: MCPPDRFSPPHDRNSYAPARCNSMAVGHMLARRFGLPLLNKAVSSRRAITTQRFPRARTVALAAWKQEVLWAEAPLVEVERAAESLYHVVLDISDNPDLMEGHTTPGQFVQVRVGDSKPAFLAIASPPATSSGGSLEFLIKYVEGSTAGSLCNLRKGDTVELSQVLGNGFDIRQ

Protein Length: 175

Fln nts: A_-_ATGTGTCCCCCGGACCGCTTTTCCCCGCCACATGACCGCAATTCCTATGCTCCCGCTCGCTGCAACTCCATGGCCGTCGGTCACATGCTAGCCCGGAGATTTGGCCTACCTCTACTAAACAAAGCCGTATCCAGCCGCAGGGCCATCACCACACAGAGGTTCCCCAGGGCTCGAACTGTCGCTCTAGCGGCCTGGAAGCAGGAGGTTCTATGGGCGGAGGCCCCGCTGGTGGAGGTTGAGAGGGCGGCCGAGAGCCTGTACCATGTGGTTTTAGATATCAGCGACAATCCGGATCTCATGGAGGGGCACACAACCCCAGGGCAGTTCGTGCAGGTTAGGGTTGGAGATAGCAAACCTGCGTTTCTAGCGATAGCTTCACCGCCCGCTACATCTAGCGGAGGTTCTCTAGAGTTTTTGATTAAGTATGTCGAGGGATCCACGGCAGGGTCTCTGTGCAATCTTCGTAAAGGGGATACGGTAGAGTTGAGTCAGGTTTTAGGCAATGGTTTCGATATTCGCCAAA

Fln Alignment:

Contig2697___LWAEAPLVEV-ERAAESLYHVVLDISDNPDLMEGHTTPGQFVQVRVGDS------KPAFLAIASPPA-TSSGGSLEFLIKYVEGSTAGSLCNLRKGDTVELSQVLGNGFDIRQ
P43394_________________IWTPVPISRVLPAAAESLFKVIVDLSRSPDLVYNFVSPGQYVQIRIPEAIVNPPPRPAYFYIASPPSLVKKNLEFEFLIRSVPGTTSEVLCSLKEGDVVDLTQIIGRGFDIEQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain