SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene2695

Length: 402 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene2695
TGCCCTCACGACCTCTTTCAATTACTAAAATGGATTTAGGTGCTTGCTCAAAAGTTCACTCCTTACAACTACGAAAAGAATATGAAAGTGCAAAGGCAAAAGGTAAAGATAATTATGACAGGGAGCTAGAAGATGTTCTTGAAAGGCATATTGGTGAGTGTGACAGGAAAATTACAAGAGCCCTAAGACGCCTAGAGGATGACGATGCTAAGGCTGCAACAGCAATATCTGTATCTGCAGTTACACAGTCCCCTGAGGTGGAAGACTACACAAAACAAATAAAGGAGAAGCTGAAAGAAGCAGAATATCTAGACTTGGAAGGGAGAAGTGACGATAGGATAAGAATTATGGAGCTGGTTGAGGAATTGAGAGGAAAACGAGCAGATAAACAAGCTATGCTGC

Ace file of the UniGene biog3_v1.0_unigene2695 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8274	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	LUC7 related protein [Arabidopsis thaliana] gb\|AAK96571.1\| AT5g17440/K3M16_10 [Arabidopsis thaliana] gb\|AAL36075.1\| AT5g17440/K3M16_10 [Arabidopsis thaliana] gb\|AED92426.1\| LUC7 related protein [Arabidopsis thaliana]	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	luc7 related protein	-	-	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	double fertilization forming a zygote and endosperm	GO:0009567	Biological Process	0.0	80%

Source	InterPros	Term	Type	e value	Identity
Sma3	LUC7-related	IPR004882	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ABV1

Fln msg: Distance to subject end: 248 aas, your sequence is shorter than subject: 133 - 422

Fln protein: PSRPLSITKMDLGACSKVHSLQLRKEYESAKAKGKDNYDRELEDVLERHIGECDRKITRALRRLEDDDAKAATAISVSAVTQSPEVEDYTKQIKEKLKEAEYLDLEGRSDDRIRIMELVEELRGKRADKQAML

Protein Length: 134

Fln nts: TGCCCTCACGACCTCTTTCAATTACTAAAATGGATTTAGGTGCTTGCTCAAAAGTTCACTCCTTACAACTACGAAAAGAATATGAAAGTGCAAAGGCAAAAGGTAAAGATAATTATGACAGGGAGCTAGAAGATGTTCTTGAAAGGCATATTGGTGAGTGTGACAGGAAAATTACAAGAGCCCTAAGACGCCTAGAGGATGACGATGCTAAGGCTGCAACAGCAATATCTGTATCTGCAGTTACACAGTCCCCTGAGGTGGAAGACTACACAAAACAAATAAAGGAGAAGCTGAAAGAAGCAGAATATCTAGACTTGGAAGGGAGAAGTGACGATAGGATAAGAATTATGGAGCTGGTTGAGGAATTGAGAGGAAAACGAGCAGATAAACAAGCTATGCTGC

Fln Alignment:

Contig2695___PSRPLSITKMDLGACSKVHSLQLRKEYESAKAKGKDNYDRELEDVLERHIGECDRKITRALRRLEDDDAKAATAISVSAVTQSPEVEDYTKQIKEKLKEAEYLDLEGRSDDRIRIMELVEELRGKRADKQAML
D5ABV1_________________PHDLFQLTKMDLGACSKVHSLQLRKEYESAKAKAKDNYDRELEDVLERHIGECDRKITRALRRLEDDDAKAATAISVSAVTQSPEVEEYTKQIKEKLKEAEYLDLEGRSDDKIRIMELVEELRAKRADKQAML

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
96	16			83	0.994512
99			16	83	0.994512
100		83		16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain