SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene2661

Length: 289 nt

UniGene Fasta

>biog3_v1.0_unigene2661
AATGTCACGGTTTTATAAAGGACGAGACAATATTACAAGAGAGGGAGGCCGATATAAATGTTAAATGACGAGAACCTGAGAAGTTTTCATCCGGAGAAGCCATTGATGAGTTTAGGTCTCGCAAGAGACTAAATTATCCGTGTGAAGAATCCTTACAGGTAGCTATCATGGGAAACGATTCATATGACTCTGGAGAAAAGGCTTCAGCGCCAGGTGGAGGCAGCGGCAAGACTCTTATTGCTACCATCGACCCTGACGCCTTTGAATGCATAATCTGCATGGAACCCCT

Ace file of the UniGene biog3_v1.0_unigene2661

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene941	1/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ubiquitin; TRAF-like [Medicago truncatula]	-	-	4.0e-38	38%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	60%
Blast2go	ubiquitin	-	-	0.0	58%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	0.0	58%

Source	GOs	Term	Type	Identity
Blast2go	multicellular organismal development	GO:0007275	Biological Process	58%
Blast2go	protein ubiquitination	GO:0016567	Biological Process	58%
Blast2go	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	58%
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	58%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	58%
Blast2go	nucleus	GO:0005634	Cellular Component	58%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Seven-in-absentia protein, sina	IPR004162	-	-
Sma3	Zinc finger, SIAH-type	IPR013010	-	-
Sma3	Seven In Absentia Homolog-type	IPR013323	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-
Sma3	Seven-in-absentia protein, TRAF-like domain	IPR018121	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AC11

Fln msg: Distance to subject end: 219 aas, W1: There is no M at the beginning, your sequence is shorter than subject: 73 - 293

Fln protein: REPEKFSSGEAIDEFRSRKRLNYPCEESLQVAIMGNDSYDSGEKASAPGGGSGKTLIATIDPDAFECIICMEP

Protein Length: 74

Fln nts: AATGTCACGGTTTTATAAAGGACGAGACAATATTACAAGAGAGGGAGGCCGATATAAATGTTAA_-_ATGACGAGAACCTGAGAAGTTTTCATCCGGAGAAGCCATTGATGAGTTTAGGTCTCGCAAGAGACTAAATTATCCGTGTGAAGAATCCTTACAGGTAGCTATCATGGGAAACGATTCATATGACTCTGGAGAAAAGGCTTCAGCGCCAGGTGGAGGCAGCGGCAAGACTCTTATTGCTACCATCGACCCTGACGCCTTTGAATGCATAATCTGCATGGAACCCCT

Fln Alignment:

Contig2661___KFSSGEAIDEFRSRKRLNYP-CEESLQVAIMGNDSYDSGEKASAPGG-GSGKTLIATIDPDAFECIICMEP
D5AC11_________________KFSSGESSEEFTSPKRVKLSDCEGSSQVPNMGNNLNCSGAAAAAAAAVGSGKALIAAIDPDAFECSICMEP

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
177	66			33	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain