SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene2617

Length: 551 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene2617
AATGTCTCTGGTGCCCCAGAAGAAACAAAAACTGGAAAAATTCAAGATATCTGCAGTAAAAGCATCGCCGGATTATCTAGTTGAAAAGTTGAAATCTGAGGATTTAGACAAGCTACTGGAATCCAAAAGAACGACTCCCGTAGTGGTGGACTTTTATGCAACATGGTGTGGTCCTTGTATTTTGCTTGCACAACAGTTGGAGATGCTTGCTGTGGAATATGGACCAGCTGTACAATTTGTCAAGATAGATACCGATGAAGAATATGCACTAGCCCAACAACTGCAGATCCGTGGACTTCCCACTATGGTCTTTATCAGTCCAGATTCTCAAAAGCCTGCAATTCGAACTGAAGGCCTTCTTCCTAATGAAACAATCAAAACTATAATTGAGACTGAACTGTGACAACATCAGTTATATGAAGTCCACGGTCAATTTAGATCAAACATATAGAGAATATAACGTGTCATTTGATTTTCTCTTATTATTTTTAAAGTTGTGTACAGTAAGTTTTTATACAGATATTACTCAGGCTTCAGCAATATGACACATT

Ace file of the UniGene biog3_v1.0_unigene2617 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene24037	8/9

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative thioredoxin [Solanum lycopersicum]	-	-	2.0e-26	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	36%
Blast2go	protein	-	-	5.46815e-33	78%

Source	ECs	Term	Type	e value	Identity
Blast2go	Protein-disulfide reductase.	EC:1.8.1.8	-	5.46815e-33	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	cell redox homeostasis	GO:0045454	Biological Process	5.46815e-33	78%
Blast2go	plastid organization	GO:0009657	Biological Process	5.46815e-33	78%
Blast2go	protein-disulfide reductase activity	GO:0047134	Molecular Function	5.46815e-33	78%
Blast2go	protein disulfide oxidoreductase activity	GO:0015035	Molecular Function	5.46815e-33	78%
Blast2go	nucleoid	GO:0009295	Cellular Component	5.46815e-33	78%
Blast2go	chloroplast	GO:0009507	Cellular Component	5.46815e-33	78%
Blast2go	thylakoid	GO:0009579	Cellular Component	5.46815e-33	78%

Source	InterPros	Term	Type	Identity
Sma3		IPR006662	-	-
Sma3		IPR012335	-	-
Sma3	Thioredoxin domain	IPR013766	-	-
Sma3		IPR015467	-	-
Sma3		IPR017936	-	-
Sma3	Thioredoxin, conserved site	IPR017937	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NRF7

Fln msg: your sequence is shorter than subject: 134 - 191

Fln protein: MSLVPQKKQKLEKFKISAVKASPDYLVEKLKSEDLDKLLESKRTTPVVVDFYATWCGPCILLAQQLEMLAVEYGPAVQFVKIDTDEEYALAQQLQIRGLPTMVFISPDSQKPAIRTEGLLPNETIKTIIETEL*

Protein Length: 135

Fln nts: AATGTCTCTGGTGCCCCAGAAGAAACAAAAACTGGAAAAATTCAAGATATCTGCAGTAAAAGCATCGCCGGATTATCTAGTTGAAAAGTTGAAATCTGAGGATTTAGACAAGCTACTGGAATCCAAAAGAACGACTCCCGTAGTGGTGGACTTTTATGCAACATGGTGTGGTCCTTGTATTTTGCTTGCACAACAGTTGGAGATGCTTGCTGTGGAATATGGACCAGCTGTACAATTTGTCAAGATAGATACCGATGAAGAATATGCACTAGCCCAACAACTGCAGATCCGTGGACTTCCCACTATGGTCTTTATCAGTCCAGATTCTCAAAAGCCTGCAATTCGAACTGAAGGCCTTCTTCCTAATGAAACAATCAAAACTATAATTGAGACTGAACTGTGA___CAACATCAGTTATATGAAGTCCACGGTCAATTTAGATCAAACATATAGAGAATATAACGTGTCATTTGATTTTCTCTTATTATTTTTAAAGTTGTGTACAGTAAGTTTTTATACAGATATTACTCAGGCTTCAGCAATATGACACATT

Fln Alignment:

Contig2617___PVVVDFYATWCGPCILLAQQLEMLAVEYGPAVQFVKIDTDEEYALAQQLQIRGLPTMVFISPDSQKPAI
A9NRF7_________________PVLVDFWAPWCGPCRMIAPLIDELAKQYAGKIMCLKLNTDESPNIATEYGIRSIPTVMVFKNGEKKDTV

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
30	33			66	0.997452
33		66	33		0.997452
48	20	80			0.995493
310	14			85	0.993533
311		14	85		0.993533
313		85		14	0.993533
494	25			75	0.996473
495		25		75	0.996473
497		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain