SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene2569

Length: 616 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene2569 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11435	10/10

Source	Descriptions	Term	Type	Identity
AutoFact	Putative carbamoyl phosphate synthase large subunit n=1 Tax=Nicotiana tabacum RepID=Q8L6J9_TOBAC	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	68%
Blast2go	carbamoyl-phosphate synthase large chain-like	-	-	87%

Source	ECs	Term	Type	e value	Identity
Blast2go	Carbamoyl-phosphate synthase (glutamine-hydrolyzing).	EC:6.3.5.5	-	0.0	87%

Source	KEGGs	Term	Type	Identity
Blast2go	Pyrimidine metabolism	00240		87%
Blast2go	Alanine, aspartate and glutamate metabolism	00250		87%
Blast2go	Metabolic pathways	01100		87%
Blast2go	Carbamoyl-phosphate synthase (ammonia).	EC:6.3.4.16	-	87%

Source	KEGGs	Term	Identity
Blast2go	Alanine, aspartate and glutamate metabolism	00250	87%
Blast2go	Arginine and proline metabolism	00330	87%
Blast2go	Nitrogen metabolism	00910	87%
Blast2go	Metabolic pathways	01100	87%

Source	GOs	Term	Type	Identity
Blast2go	arginine biosynthetic process	GO:0006526	Biological Process	87%
Blast2go	cellular response to phosphate starvation	GO:0016036	Biological Process	87%
Blast2go	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity	GO:0004088	Molecular Function	87%
Blast2go	carbamoyl-phosphate synthase (ammonia) activity	GO:0004087	Molecular Function	87%
Blast2go	ATP binding	GO:0005524	Molecular Function	87%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	87%
Blast2go	membrane	GO:0016020	Cellular Component	87%

Source	InterPros	Term	Type	Identity
Sma3	Carbamoyl-phosphate synthetase, large subunit, ATP-binding	IPR005479	-	-
Sma3	Carbamoyl-phosphate synthetase, large subunit oligomerisation domain	IPR005480	-	-
Sma3	Carbamoyl-phosphate synthase, large subunit, N-terminal	IPR005481	-	-
Sma3	Carbamoyl-phosphate synthase, large subunit, CPS-domain	IPR005483	-	-
Sma3	Carbamoyl-phosphate synthase, large subunit	IPR006275	-	-
Sma3	Methylglyoxal synthase-like domain	IPR011607	-	-
Sma3	ATP-grasp fold	IPR011761	-	-
Sma3	ATP-grasp fold, subdomain 2	IPR013816	-	-
Sma3		IPR013817	-	-
Sma3	Alcohol dehydrogenase, iron-type, conserved site	IPR018211	-	-

Full-Lengther Next Prediction

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
188			83	16	0.994512
189	83		16		0.994512
190	83			16	0.994512
195	14			85	0.993533
196	14		85		0.993533
198	85		14		0.993533
199	85			14	0.993533
209	12	87			0.992554
210	12			87	0.992554
212		87	12		0.992554
213	87			12	0.992554
271	16			83	0.994512
272		16	83		0.994512
273	16		83		0.994512
287			16	83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain