SustainPineDB

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Assembly info
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ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene2548

Length: 264 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene2548
CTCACTAGGTCAAAGGAAAAATCATAATCATAATTTGAAAGTGATGGGGAGCAAAGAAGAATTGTTATCTGCTGCTAAAATAGGTGCAAAAGTTGAGAGAGTTCCTTCTTTTTGTGGGACTGAAAATAAGCAATTATCCACTGGTTCATATCAAGGCCAAGATGATGACACTTTGGAGGTCTGTAGAGTATGCCACTGTACAGAACCTGACAAAAAGGGGGAAGCTGCTCTTGAGTTTTTGGGAATCTCCACCCCTTCAACATT

Ace file of the UniGene biog3_v1.0_unigene2548 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3233	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	RING/FYVE/PHD zinc finger-containing protein [Arabidopsis thaliana] gb\|AED91346.1\| RING/FYVE/PHD zinc finger-containing protein [Arabidopsis thaliana]	-	-	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	ring fyve phd zinc finger-containing protein	-	-	63%

Source	GOs	Term	Type	e value	Identity
Blast2go	maintenance of shoot apical meristem identity	GO:0010492	Biological Process	0.0	63%
Blast2go	membrane	GO:0016020	Cellular Component	0.0	63%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, RING-CH-type	IPR011016	-	-
Sma3	Peptidase C14, ICE, catalytic subunit p20, active site	IPR016129	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9P144

Fln msg: STOP codon was not found. Distance to subject end: 7 aas, W1: There is no M at the beginning,

Fln protein: VQKLREFLLFVGLKISNYPLVHIKAKMMTLWRSVEYATVQNLTKRGKLLLSFWESPPLQH

Protein Length: 61

Fln nts: CTCACTAGGTCAAAGGAAAAATCATAATCATAATTTGAAAGTGATGGGGAGCAAAGAAGAATTGTTATCTGCTGCTAAAATAGGTGCAAAAGTTGAGAGAGTTCCTTCTTTTTGTGGGACTGAAAATAAGCAATTATCCACTGGTTCATATCAAGGCCAAGATGATGACACTTTGGAGGTCTGTAGAGTATGCCACTGTACAGAACCTGACAAAAAGGGGGAAGCTGCTCTTGAGTTTTTGGGAATCTCCACCCCTTCAACATT

Fln Alignment:

Contig2548___LREFLLFVGLKISNYPLVHIKAKMMTLWRSVEYATVQNLTKRGKLLLSFWESPPLQ
A9P144_________________MRDFLLFARLKISNYPLVHIKAKMMTLWRFVEYATVKNLTKKEKLLLSFWESPPLQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain