SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene2534

Length: 1198 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene2534

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7311	22/22

Source	Descriptions	Term	Type	Identity
AutoFact	putative agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein [Oryza sativa Japonica Group] dbj\|BAD32028.1\| putative agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein [Oryza sa	-	-	33%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	24%
Blast2go	protein	-	-	56%

Source	InterPros	Term	Type	Identity
Sma3	Bromo adjacent homology (BAH) domain	IPR001025	-	-
Sma3	Agenet	IPR008395	-	-
Sma3	Tudor-like, plant	IPR014002	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQA9

Fln msg: Distance to subject end: 70 aas, No stop codon before M and low homology subject, your sequence is shorter than subject: 340 - 359

Fln protein: MVEKSKDYLHLQGLADLDFNIGDKVELLSQDSGIRGCWFKCTVLSKQLHRLKVRYEDVQNEDESDNLEEWIPAFRVAAPDKFGIRNPGRLTIRPYPPEEETSRSIVVGTAVDAWWNDGWWEGVVVMIHEQEAQVHVYFPGENERSIFKTRDLRVSRDWVNNQWTLVKEAPDVAATQVSHDKKDGLQPVTLPGRCTESPSSSVALRQSSELDGCENSHANESDMDLKGEVGVESTTSEKEQRACNLVNDGLLGDLRWKSSRKRKRTREATALSKTSSSGVKLKLSKRKTVDSNVLKNGEDLLECNKKEQAKMRRSGEELVKAKRLRQGRENVNPIHGCPIV

Protein Length: 341

Fln nts: AATGTGGCTTAAGCAAGGGGCCTAGAAAATCGAGGAGCTCTAGAAGACGGTCTGGGGCCCTTAGTCACAGTGGTCGACATGTGGATGCCCCAGATAGTTTATACAGATTATCTGTTTCTGCTGAAGTAGATGAAGATAATAATTGCACGCTAGACATTGCACCACCGATAAAATCT_-_ATGGTGGAGAAGAGCAAGGACTATTTGCATCTACAAGGATTAGCGGATTTGGATTTTAACATTGGAGACAAGGTAGAGTTGCTTTCGCAGGACAGTGGTATCAGAGGTTGTTGGTTTAAGTGCACAGTACTAAGCAAACAACTACATCGTCTAAAAGTTCGCTATGAGGATGTTCAAAATGAAGATGAAAGTGACAACTTAGAGGAGTGGATTCCCGCTTTTAGAGTAGCAGCACCAGACAAATTTGGGATTCGAAACCCTGGACGGCTAACCATCCGCCCCTACCCTCCTGAAGAAGAAACTTCTAGAAGCATTGTAGTTGGCACTGCGGTGGATGCATGGTGGAATGATGGCTGGTGGGAAGGTGTGGTGGTTATGATACATGAACAAGAGGCTCAAGTACATGTTTATTTTCCTGGTGAAAATGAAAGATCAATATTCAAAACAAGGGACTTGCGCGTTTCCAGGGATTGGGTTAACAATCAGTGGACTTTGGTAAAAGAGGCACCAGATGTAGCTGCTACCCAAGTCTCTCATGATAAAAAGGATGGATTACAGCCTGTGACATTGCCTGGGAGATGTACTGAATCTCCAAGTTCTTCAGTTGCATTGAGACAATCCAGTGAGTTGGACGGGTGTGAAAATTCTCATGCTAATGAAAGCGATATGGATTTAAAAGGAGAGGTTGGAGTGGAATCCACAACTAGCGAGAAAGAACAGCGTGCATGTAATCTGGTAAATGATGGACTGCTTGGTGATTTGAGGTGGAAATCTTCAAGAAAGCGAAAACGCACCAGAGAAGCTACAGCTTTATCCAAAACTAGCTCTTCTGGTGTTAAGTTGAAATTGTCGAAAAGGAAGACCGTGGATAGTAACGTGTTGAAAAACGGGGAAGACTTGTTGGAATGCAACAAGAAGGAGCAAGCCAAAATGCGGAGAAGTGGTGAAGAACTTGTAAAAGCCAAACGATTGAGGCAAGGGCGAGAAAACGTGAATCCTATACATGGCTGCCCCATAGTAAG

Fln Alignment:

Contig2534___ADLDFNIGDKVELLSQDSGIRGCWFKCTVLSKQLHRLKVRYEDVQNEDESDNLEEWIPAFRVAAPDKFGIRNPGRLTIRPYPPEEETSRSIVVGTAVDAWWNDGWWEGVVVMIHEQEAQVHVYFPGENERSIFKTRDLRVSRDWVNNQWTLVKEAPDVAATQVSHDKKDGLQPVTLPGRCTESPSSSVALRQSSELDGCENSHANESDMDLKGEVGVESTTSE-KEQRACNLVNDGLLGDLRWXXXXXXXXTREATALSKTSSSGVKLKLSKRKTVDSNVLKNGEDL
B8LQA9_________________ANMSLKRGDSVEVSSEEEGFTGAWFPATILRKIGNVFLVEFRDLMTDDEKSKLKEKVKAH----------------LIRP-EPEALNRQWFFLNEEVDVYDQDGWWRGFVDGILPQNKYV-VYFKQTLEKLEYDITQLRLHQDWIDGKW--VKNSENMGIKE-----PNPKCPLLSAGDVENIPSKSVK----------RSNKTNEK----RSEVKVSESSGECKADRQCETLKDGCSQPTK-----KSSKRKQGTKDQSNNGSACRRKILSEENVDGTETHDEENI

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
1091	75			25	0.996473
1092			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain