SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene2517

Length: 538 nt

UniGene Fasta

>biog3_v1.0_unigene2517
AATGTGTTCTTCCTCCTCCCAACCTGAAACTCCAAGATCTCCGAGGGTTTCTTTCTTCGGAAGCGGCAGATCGAATCACATTGACTCCAGCCTTGCATCCACCCGACTTGTCAAAGATCTGGAAGATGTTTTTAAGAAATTTGACGCTAACGGAGATGGAAAGATATCGTGGCTGGAGCTCAGGTCGATCTTGAGTTCCCTTGGTTGCAAGGCAACCGAAGAGAGGTGAAGAAGATGATCAAAGAAGCGGACCGCGACGGAGACGGTTTCATTGATTTGCAAGAATTCGTCGATTTGAATACACAAGGCATCGATTCTGCTTCCAGCCTGAAGGATCTGAGAGATGCTTTTGAAATTTTTGATTTGGATAGAAACGGGGCAATTTCTTCAGAGGAGCTTCACATTGTTCTGCGAAACCTGGGAGAGCACACCACAATGGAGGACTGTCAATTGATGATAAGGGGTGTAGATTGCGATGGAAACGGGCAAGTTGATTTCGAAGAATTCAAAACTATGATGTCCAGTTCCATATAGATGC

Ace file of the UniGene biog3_v1.0_unigene2517

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1511	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Polcalcin (Fragment) n=4 Tax=Pseudotsuga RepID=C6F9H5_PSEMZ	-	-	81%
FL-Next	sp=Probable calcium-binding protein CML25; Arabidopsis thaliana (Mouse-ear cress).	-	-	48%
Blast2go	polcalcin	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	root hair elongation	GO:0048767	Biological Process	78%
Blast2go	response to cold	GO:0009409	Biological Process	78%
Blast2go	calcium ion binding	GO:0005509	Molecular Function	78%
Blast2go	cytoplasm	GO:0005737	Cellular Component	78%
Blast2go	nucleus	GO:0005634	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Sma3	Recoverin	IPR001125	-	-
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	Parvalbumin	IPR008080	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-HAND 2	IPR018249	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9FYK2

Fln msg: Separated hits, possible frame ERROR between 205 and 223,

Fln protein: MCSSSSQPETPRSPRVSFFGSGRSNHIDSSLASTRLVKDLEDVFKKFDANGDGKISWLELRSILSSLxxxxxxxEVKKMIKEADRDGDGFIDLQEFVDLNTQGIDSASSLKDLRDAFEIFDLDRNGAISSEELHIVLRNLGEHTTMEDCQLMIRGVDCDGNGQVDFEEFKTMMSSSI*

Protein Length: 179

Fln nts: A_-_ATGTGTTCTTCCTCCTCCCAACCTGAAACTCCAAGATCTCCGAGGGTTTCTTTCTTCGGAAGCGGCAGATCGAATCACATTGACTCCAGCCTTGCATCCACCCGACTTGTCAAAGATCTGGAAGATGTTTTTAAGAAATTTGACGCTAACGGAGATGGAAAGATATCGTGGCTGGAGCTCAGGTCGATCTTGAGTTCCCTTGGxxxxxxxxxxxxxxxxxxAGAGGTGAAGAAGATGATCAAAGAAGCGGACCGCGACGGAGACGGTTTCATTGATTTGCAAGAATTCGTCGATTTGAATACACAAGGCATCGATTCTGCTTCCAGCCTGAAGGATCTGAGAGATGCTTTTGAAATTTTTGATTTGGATAGAAACGGGGCAATTTCTTCAGAGGAGCTTCACATTGTTCTGCGAAACCTGGGAGAGCACACCACAATGGAGGACTGTCAATTGATGATAAGGGGTGTAGATTGCGATGGAAACGGGCAAGTTGATTTCGAAGAATTCAAAACTATGATGTCCAGTTCCATATAG___ATGC

Fln Alignment:

Contig2517___SNHIDSSLASTRLVKDLEDVFKKFDANGDGKISWLELRSILSSLGxxxxxxEVKKMIKEADRDGDGFIDLQEFVDLNTQGIDSASSLKDLRDAFEIFDLDRNGAISSEELHIVLRNLGEHTTMEDCQLMIRGVDCDGNGQVDFEEFKTMMS
Q9FYK2_________________SPYLQKARSGKTEIRELEAVFKKFDVNGDGKISSKELGAIMTSLGxxxxxxELEKAITEIDRKGDGYINFEEFVELNTKGMDQNDVLENLKDAFSVYDIDGNGSISAEELHEVLRSLGDECSIAECRKMIGGVDKDGDGTIDFEEFKIMMT

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
260	25		75		0.996473
262			75	25	0.996473
263	75		25		0.996473
264		75		25	0.996473
482	66	33			0.997452
484		66		33	0.997452
485			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain