SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene2494

Length: 340 nt

UniGene Fasta

>biog3_v1.0_unigene2494
TGGAGCAGAACATGGAGAAGCCAAAGAAAATGGGACGCCAGTGCGACATATGTGCACAAAAGAGAGCTGCTCTGAGAAGACCCAAGACTCAACAACAGGTATGCAGGGAATGCTTTTATTTTGCCTTTGAAGAAGAGATTCACAAGGTTATTATCGAGAACCACCTTTTCAGACCAGGAGAACGTGTTGCTATTGGAGCTTCTGGTGGTAAAGACTCCACTGTTCTAGCACATGTCTTGACAGAGTTGAATAAACGACACAATTATGGTCTAGATCTGTTCTTGCTATCAATAGATGAAGGCATCACTGGTTACAGGGATGACTCACTCGAGACGGTGAA

Ace file of the UniGene biog3_v1.0_unigene2494

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5386	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	cytoplasmic tRNA 2-thiolation protein 1 [Arabidopsis thaliana] sp\|O64862.2\|CTU1_ARATH RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName: Full=Cytoplasmic tRNA adenylyltransferase 1 dbj\|BAC41934.1\| unknown protein [Arabidopsis thaliana] gb\|AAP	-	-	78%
FL-Next	sp=Cytoplasmic tRNA 2-thiolation protein 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	78%
Blast2go	cytoplasmic trna 2-thiolation protein 1	-	-	88%

Source	GOs	Term	Type	Identity
Blast2go	tRNA thio-modification	GO:0034227	Biological Process	88%
Blast2go	response to reactive oxygen species	GO:0000302	Biological Process	88%
Blast2go	ATP binding	GO:0005524	Molecular Function	88%
Blast2go	tRNA binding	GO:0000049	Molecular Function	88%
Blast2go	cytoplasm	GO:0005737	Cellular Component	88%
Blast2go	regulation of plant-type cell wall organization or biogenesis	GO:0080157	Biological Process	88%

Source	InterPros	Term	Type	Identity
Sma3	2-thiocytidine tRNA biosynthesis protein, TtcA	IPR012089	-	-
Sma3	tRNA(Ile)-lysidine/2-thiocytidine synthase	IPR011063	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: O64862

Fln msg: Distance to subject end: 242 aas, atg_distance in limit (1-15): atg_distance = 1, your sequence is shorter than subject: 109 - 355

Fln protein: MEKPKKMGRQCDICAQKRAALRRPKTQQQVCRECFYFAFEEEIHKVIIENHLFRPGERVAIGASGGKDSTVLAHVLTELNKRHNYGLDLFLLSIDEGITGYRDDSLETV

Protein Length: 110

Fln nts: TGGAGCAGAAC_-_ATGGAGAAGCCAAAGAAAATGGGACGCCAGTGCGACATATGTGCACAAAAGAGAGCTGCTCTGAGAAGACCCAAGACTCAACAACAGGTATGCAGGGAATGCTTTTATTTTGCCTTTGAAGAAGAGATTCACAAGGTTATTATCGAGAACCACCTTTTCAGACCAGGAGAACGTGTTGCTATTGGAGCTTCTGGTGGTAAAGACTCCACTGTTCTAGCACATGTCTTGACAGAGTTGAATAAACGACACAATTATGGTCTAGATCTGTTCTTGCTATCAATAGATGAAGGCATCACTGGTTACAGGGATGACTCACTCGAGACGGTGAA

Fln Alignment:

Contig2494___RQCDICAQKRAALRRPKTQQQVCRECFYFAFEEEIHKVIIENHLFRPGERVAIGASGGKDSTVLAHVLTELNKRHNYGLDLFLLSIDEGITGYRDDSLETV
O64862_________________RLCCLCNLRRPVLKRPKTLQQICRECFYEVFEEEIHQVIVQNRLFKSGERVAIGASGGKDSTVLAYVLSELNRRHNYGLDLFLLSIDEGITGYRDDSLETV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain