SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene2466

Length: 1338 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene2466

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6965	17/19
SustainPine v2.0	sp_v2.0_unigene24876	2/19

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Syntaxin/t-SNARE family protein [Arabidopsis thaliana] gb\|AAK96588.1\| At1g27700/T22C5_14 [Arabidopsis thaliana] gb\|AAM19970.1\| At1g27700/T22C5_14 [Arabidopsis thaliana] gb\|AEE30866.1\| Syntaxin/t-SNARE family protein [Arabidopsis thaliana]	-	-	2.0e-31	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	95%
Blast2go	syntaxin family protein	-	-	0.0	59%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleus	GO:0005634	Cellular Component	0.0	59%

Source	InterPros	Term	Type	e value	Identity
Sma3	Syntaxin 6, N-terminal	IPR015260	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AC62

Fln msg: Separated hits, possible frame ERROR between 521 and 523, your sequence is longer than subject: 378 - 278

Fln protein: MTANFGRWEADPFFSAAEDVQDSADRLESAYRSWVSARNATDTDPSYGENLDNSVDILRRELQTALGTAKWQLDEFERAVKSSYLGRDVDASDRHKQFVMAIQSQLCGIEKAMSDSVIDEGKKRLRWVQLDDHEKDDLALFLCGPCENNNNSLExxQHVNTTAEMVDWRLEDAHMLNRSELRDICHAESDCGPDVNGYKETILINKDSKFVVQLAEQNVADSQDDWHTGATIDRKKWAQEKFK*WSCPWFLENCNC**KR*KEIIESQSKESPTRLNLWDLTNKLGLAAKLKWSKSGLKRWKDSVHCHLGNEYINGPGYEYMVER*QKNTNGDVILMTTFSIINNPVAGLEHFKGRCRGLSTASSTVTPYK*LGCLL*

Protein Length: 379

Fln nts: AATGTAGTTCGCTTTTTGGGGTTTTTGAAACGTTTAATTGGCTGAATTGTTTAAAT_-_ATGACGGCGAATTTTGGTCGGTGGGAAGCCGATCCTTTTTTCTCAGCTGCCGAGGATGTGCAAGACTCCGCTGACAGGTTGGAATCCGCATACAGAAGTTGGGTGTCTGCTCGGAACGCGACAGACACAGATCCAAGTTACGGTGAGAATTTGGACAATTCAGTTGATATTCTGAGACGGGAGCTACAGACCGCCCTTGGCACTGCCAAATGGCAGCTGGATGAGTTTGAAAGGGCTGTAAAGTCAAGTTACCTGGGGAGAGATGTAGATGCAAGCGACAGGCATAAACAGTTTGTTATGGCCATCCAGAGTCAACTATGTGGCATAGAAAAAGCCATGAGTGATTCAGTTATTGATGAAGGCAAGAAACGTCTCCGATGGGTACAACTTGATGATCACGAGAAGGATGATTTGGCCTTGTTTCTTTGTGGACCCTGCGAGAATAACAACAACTCTTTGGAACAxxxCCAGCATGTTAACACAACAGCAGAAATGGTGGACTGGAGACTTGAGGACGCACACATGTTGAATAGAAGTGAGTTAAGAGACATTTGTCATGCCGAAAGTGACTGTGGTCCTGATGTCAATGGTTATAAAGAAACCATTTTGATCAACAAGGACTCCAAGTTTGTAGTACAATTGGCTGAACAAAATGTTGCTGACAGTCAGGATGATTGGCATACTGGAGCTACTATAGACAGAAAAAAGTGGGCACAGGAGAAGTTCAAGTGATGGAGCTGTCCTTGGTTCTTGGAAAATTGTAATTGCTGATGAAAACGATGAAAAGAAATTATTGAATCCCAGTCAAAAGAATCTCCGACTAGATTGAATTTGTGGGATTTGACAAACAAGCTGGGATTGGCAGCCAAGTTAAAGTGGTCCAAGAGTGGCCTAAAGAGGTGGAAGGATAGTGTTCATTGTCATCTTGGTAATGAGTATATTAACGGACCTGGGTATGAATACATGGTTGAGAGGTAACAAAAAAATACTAATGGGGATGTGATTCTTATGACAACATTCTCAATCATAAACAATCCTGTGGCTGGGCTGGAGCACTTCAAAGGAAGGTGCAGAGGTCTCAGTACTGCATCCAGTACAGTCACCCCTTACAAATAACTTGGATGCTTATTATAA___TGCTCTGTCTAGTAGGTCTCTTCACATTTCTTGTAAACTAAAATGCCGTCGGGGAAGGTGTCTTTCACAAATGACGGGATTCAATTATTAAATGGTTGCTTATTTTGGAGTCCAAGAAGCTGGGGCAGTGTGTACATTAATTTCAACATT

Fln Alignment:

Contig2466___MSDSVIDEGKKRLRWVQLDDHEKDDLALFLCGPCENNNNSLEQxQHVNTTAEMVDWRLEDAHMLNRSELRDICHAESDCGPDVNGYKETILINKDSKFVVQLAEQNVADSQDDWHTGATIDRKKWAQEK------FK*WSCPWFLENCNC**KR*KEIIESQSKESPTRLNLWDLTNKLGLAAKLKWSKSGLKRWKDSVHCHLGNEYINGPGYEYMVER*QKNTNGDVI
D5AC62_________________MSDSVIDEGKKRLRWVQLDDHEKDDLALFLCGSCENNSNSLEQxQSVNKTEEMVDLRLDDAHMLNRRDLRDFCNVGSDCGPGVNGYKETILINKDSKFVVQLAEQNVADSHDDWHTGATIDRKSGHRGSSSDGAVLGSWKIVIADENDE------KETVESQSKESPARLNLWDLTNKLGLAAKLKWSKSGLKRWKDSGHCHPGNEYIRDLGMKTWLRGNKKMTNGECV

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
386	80	20			0.995493
388	80			20	0.995493
389	80			20	0.995493
833	25		75		0.996473
837	75			25	0.996473
955	14		85		0.993533
956		14		85	0.993533
957	14		85		0.993533
958			85	14	0.993533
959	85			14	0.993533
1001	16		83		0.994512
1002			83	16	0.994512
1003	83			16	0.994512
1029		25	75		0.996473
1030	25		75		0.996473
1032	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain