SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene2465

Length: 1139 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene2465 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18348	19/19

Source	Descriptions	Term	Type	Identity
AutoFact	Sulfite exporter TauE/SafE family protein [Arabidopsis thaliana] gb\|AAM97053.1\| unknown protein [Arabidopsis thaliana] gb\|AAN72117.1\| unknown protein [Arabidopsis thaliana] dbj\|BAC42374.1\| unknown protein [Arabidopsis thaliana] gb\|AAO63445.1\| At2g25737 [A	-	-	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	protein	-	-	76%

Source	InterPros	Term	Type	e value	Identity
Sma3	Protein of unknown function DUF81	IPR002781	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LL03

Fln msg: your sequence is shorter than subject: 280 - 505

Fln protein: AERARVENVTADVEPEEHQEVDFKPLPSEPVPNEESNGSNEESSNLRLPRDATNTIWINVRWKELGILVFVWIAFLVLQIFKTKSTTCSVEYWVLNLLQIPVAMSVSLYEAVGLYRGTKSVASKGEAGINWKISQLLLYFFCGILAGVVGGLLGLGGGFILGPLLLELGVPPQVSSATATFVMTFSSSMSVVEYYFLKRFPVPYAAYLFGVCVIAAFMGQHVIRRLVILLGRASLIIFILAFVIFLSALTLGGVGIVKMIHEIENGDYMGFESLCSYTA*

Protein Length: 281

Fln nts: AAGCAGAAAGGGCGCGTGTAGAGAATGTTACAGCTGATGTGGAACCAGAAGAACATCAGGAAGTAGATTTCAAGCCTCTGCCTAGTGAACCTGTGCCAAATGAGGAGAGTAACGGTAGTAATGAGGAGAGTAGTAATTTACGGCTGCCAAGGGATGCTACGAACACAATTTGGATAAATGTTCGTTGGAAGGAATTGGGGATACTTGTGTTTGTATGGATTGCATTCTTGGTATTGCAGATTTTCAAGACCAAATCAACAACATGCTCTGTAGAATACTGGGTGCTAAACCTATTACAGATCCCTGTTGCTATGTCTGTAAGCCTTTATGAAGCTGTAGGCTTATATAGAGGAACAAAATCAGTTGCCTCTAAAGGAGAAGCAGGAATTAATTGGAAAATATCTCAGCTGCTTCTATATTTCTTTTGTGGAATCCTGGCTGGGGTTGTAGGTGGCCTACTTGGACTTGGAGGAGGATTCATCCTGGGACCTCTACTTCTGGAGCTGGGTGTTCCACCTCAGGTTTCAAGTGCCACAGCAACCTTTGTTATGACATTTTCTTCATCGATGTCTGTTGTGGAATACTATTTTCTAAAGCGATTTCCAGTTCCCTATGCTGCATACCTCTTTGGGGTCTGTGTCATTGCAGCCTTTATGGGCCAACATGTCATTCGAAGGCTTGTCATTTTGTTGGGGAGAGCATCCTTGATCATTTTTATTCTGGCTTTTGTGATCTTCTTAAGTGCTCTTACATTAGGTGGAGTAGGTATTGTTAAAATGATTCACGAAATAGAGAATGGAGACTACATGGGCTTTGAGAGCCTTTGCAGTTATACTGCATGA___TCCTTTATTTCTCAGGATTGCTTCTGATAATTCATTTCGATTACTAAGGGATTGGCAGTCGGAAGATCAGCATTTGTGATGTGTAGATCCTCAAAAGTAATCTTTTATGGGAGTTGCAATAGTTGATCAGGGAATTTGAGGTCTTAGTGTGAGTTTTCAGACATGTCTTTGACTAGAAGTTGCATCCATTCAATGGCATTTATTTTTCAGTTGATCTGCTGTAACTGTGGATATGCCAAAAACTGGCACTAAATTATGGAAGGTATTTTTCAAAGCATGTTTCTTTGCACACACATT

Fln Alignment:

Contig2465___AERARVENVTADVEPEEHQEVDFKXXXXXXXXXXXXXXXXXXXXNLRLPRDATNTIWINVRWKELGILVFVWIAFLVLQIFKTKSTTCSVEYWVLNLLQIPVAMSVSLYEAVGLYRGTKSVASKGEAGINWKISQLLLYFFCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPQVXXXXXXXXXXXXXXXXXVEYYFLKRFPVPYAAYLFGVCVIAAFMGQHVIRRLVILLGRXXXXXXXXXXXXXXXXLTLGGVGIVKMIHEIENGDYMGFESLCSYTA
B8LL03_________________AERVRVENVTADVEPEEHQEVDFKPLPSEPVPNEESNGNNEGSNNERLPTDVTNTIWFNVRWKELGILVVVWIIFLVLQVVKAKSTTCSVEYWVLNLLQIPVAMSVSLYEAIGLYKGTKAVASKGEAGINWKISQLVLYFFCGILAGVVGGLLGLGGGFILGPLLLELGVPPQVSSATATFVMTFSSSMSVVEYYFLKRFPVPYAAYLFGVCVIAAFMGQHVIRRLVILLGRASLIIFILAFVIFLSAITLGGVGIVKMIHKFENGDYMGFENLCSYSA

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
272			20	20	0.99255
512	33	66			1.0
513		66		33	1.0
514		66		33	1.0
638	33	66			1.0
665	16		83		0.994512
666	83	16			0.994512
669		83		16	0.994512
741		16	83		0.994512
798		33		66	1.0
801	66			33	1.0
921	20		80		0.995493
924	80			20	0.995493
943	20			80	0.995493
944	20	80			0.995493
945		80		20	0.995493
946		75	25		0.996473
947		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain