SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene2451

Length: 1068 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene2451

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18348	16/16

Source	Descriptions	Term	Type	Identity
AutoFact	Sulfite exporter TauE/SafE family protein [Arabidopsis thaliana] gb\|AAM97053.1\| unknown protein [Arabidopsis thaliana] gb\|AAN72117.1\| unknown protein [Arabidopsis thaliana] dbj\|BAC42374.1\| unknown protein [Arabidopsis thaliana] gb\|AAO63445.1\| At2g25737 [A	-	-	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	protein	-	-	76%

Source	InterPros	Term	Type	e value	Identity
Sma3	Protein of unknown function DUF81	IPR002781	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LL03

Fln msg: Distance to subject end: 282 aas, your sequence is shorter than subject: 218 - 505

Fln protein: MAGGWRKWLLVVVMVATFGLLLAITLGSAERIFLDGDNAKSETEKIVVPVEGNTLKYHVLKAGNFLWQSNKTEYHRVWPAMKFGWRIVLGTIVGFFGAAVGSVGGVGGGGIFVPMLTLIIGFDAKSSTAISKCMIMGAAGSTVYYNLKLKHPTLDLPIIDYDLAMLFQPMLMLGISIGVAFNVIFADWMVTILLIILFLGTSTKAFLKGVETWKQETI

Protein Length: 219

Fln nts: GATCTGGCAGAGTTTGAGTAATCTCCAGCATTTGTGAAAGAGAATGCTGAAACTTTGACGGAATTTGATCGCATTTAAGCACTGTTTTGGCAAATCTGGCCTAAATAATGCTAAATTATACTGTGAAACCTTTCTCTAGAGCGTTTCTGTCATTTTCTTCTTGAGCTTGCCTGCATTTTATCATCCGCCCAAGTTTTTGTAGATTTCTGGTAAATAGCTCGTTTTGCCACGGGGCATTTATTGTATTTGTTCTTATGACTGTAAATTCTGGAACCTTGGGCAAATATTTTTGAACAAAATTTGCTCGTTAGCCAGCTAATCGTGTAAAGCAATCTTCATTTTAGCCCTGAAGAATCTGCTTGGGGAATTTGCTTCTTGGAAGTTTGAAAATTTAGATTTTATCTGTTCAAAA_-_ATGGCCGGAGGCTGGCGGAAATGGCTGCTTGTAGTTGTAATGGTTGCTACATTTGGACTCCTCTTGGCCATTACATTAGGTTCAGCCGAAAGAATTTTTCTGGATGGGGACAATGCTAAGTCGGAAACGGAGAAAATAGTAGTTCCTGTGGAAGGCAACACGCTTAAATATCATGTGCTCAAAGCCGGGAACTTCCTTTGGCAATCCAACAAAACCGAATATCATCGAGTTTGGCCTGCAATGAAATTCGGGTGGAGGATAGTGCTCGGAACAATAGTGGGCTTTTTCGGTGCGGCCGTAGGTAGCGTTGGAGGCGTTGGTGGGGGTGGGATATTTGTTCCCATGCTTACTCTGATTATTGGATTCGATGCCAAGTCCTCAACAGCCATATCCAAGTGTATGATTATGGGGGCAGCAGGATCCACAGTCTATTATAATCTTAAGCTAAAGCATCCAACATTAGACTTACCTATCATTGATTATGATCTAGCCATGCTCTTTCAACCCATGCTTATGTTGGGAATTAGCATTGGAGTTGCTTTCAATGTTATTTTTGCGGACTGGATGGTGACCATTTTGCTTATCATCTTATTCCTAGGTACATCTACCAAAGCATTTTTAAAAGGAGTAGAAACATGGAAGCAAGAAACTATTCT

Fln Alignment:

Contig2451___MAGGWRKWLLVVVMVATFGLLLAITLGSAERIFLDGDNAKSETE----KIVVPVEGNTLKYHVLKAGNFLWQSNKTEYHRVWPAMKFGWRIVLGTXXXXXXXXXXXXXXXXXXXXXXPMLTLIIGFDAKSSTAISKCMIMGAAGSTVYYNLKLKHPTLDLPIIDYDLAMLFQPMLMLGISIGVAFNVIFADWMVTILLIILFLGTSTKAFLKGVETWKQETI
B8LL03_________________MAGGGRKWLLVVVMVATFGLLLAVTLSSAERTFLDGNSASSETERSMEKIVDPVEGNTLKYHLLKARNFLWRSNISDYQRVWPEMKFGWRIVIGSIVGFFGAAVGSVGGVGGGGIFVPMLTLIIGFDAKSSTAISKCMIMGAAGSTVYYNLKLKHPTLDLPIIDYDLAMLFQPMLMLGISIGVAFNVIFADWMVTVLLIILFLGTSTKAFLKGVETWKQETI

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
295	25	75			0.996473
296	75			25	0.996473
297	75		25		0.996473
298	75			25	0.996473
392			25	75	0.996473
895	16			83	0.994512
915	16			83	0.994512
918	83			16	0.994512
919		80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain