SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene2438

Length: 1262 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene2438

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18821	5/19
SustainPine v2.0	sp_v2.0_unigene33134	14/19

Source	Descriptions	Term	Type	Identity
AutoFact	Putative integral membrane protein n=4 Tax=Malvoideae RepID=B2ZAP4_9ROSI	-	-	69%
FL-Next	sp=GDP-mannose transporter GONST3; Arabidopsis thaliana (Mouse-ear cress).	-	-	79%
Blast2go	integral membrane protein	-	-	84%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleotide-sugar transport	GO:0015780	Biological Process	0.0	84%

Source	InterPros	Term	Type	e value	Identity
Sma3	UAA transporter	IPR013657	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q9S845

Fln msg: your sequence is shorter than subject: 318 - 372

Fln protein: SIINKWEIMKFPYPGALTALQYLTSVVAVLILGQLNLLEHDKVVLHTMWRFLPAALIFYLSLFTNSELLLHANVDTFIVFRSAVPIFVAIGESLYLKQPWPSAKTWCSLAIIFGGGVLYVVTDYQFTIMAYSWALAYLVSMSIDFVYIKHVVMTIGLNTWGLVLYNNLEAFLLFPLELIIMGELKKLKQDSTNESDWHSVGVLLPVGLSCLFGLSISFFGFSCRKVISATGFTVLGIVNKLLTVVINLVIWDNHATFIGTIGLLICMLGGILYQQSVSKPPPTASEPATNDDEEQLLELPSSELKAFGNEVVPTGPK*

Protein Length: 319

Fln nts: TCAATCATCAACAAGTGGGAAATCATGAAGTTTCCATACCCAGGAGCTTTGACAGCTTTACAATATTTGACAAGTGTAGTGGCTGTCCTGATTCTTGGCCAGTTAAATTTACTGGAACATGATAAAGTTGTCCTTCATACAATGTGGAGATTTCTACCTGCTGCTTTAATTTTCTACCTATCTCTATTTACAAATAGTGAGTTGCTACTGCATGCAAATGTTGACACATTTATTGTGTTTCGTTCAGCTGTCCCTATATTTGTTGCCATTGGTGAAAGTTTGTACTTGAAGCAGCCTTGGCCTTCTGCTAAAACTTGGTGCTCACTAGCTATTATTTTTGGAGGTGGTGTGCTTTATGTTGTCACTGATTATCAATTTACCATCATGGCATATAGTTGGGCCTTGGCATATTTGGTAAGTATGTCGATAGACTTTGTCTATATAAAGCATGTAGTCATGACAATTGGGTTGAATACTTGGGGCTTAGTGCTGTACAATAACCTGGAAGCTTTTCTTCTTTTCCCATTGGAGTTAATTATTATGGGTGAGTTGAAGAAGTTGAAGCAGGATAGCACAAATGAATCTGATTGGCATTCAGTAGGAGTCTTGCTGCCAGTTGGGCTTTCCTGCTTGTTTGGATTGTCAATTTCATTTTTTGGATTTTCCTGTCGCAAGGTTATATCTGCAACAGGTTTTACTGTTTTAGGCATTGTGAACAAGCTTCTGACGGTGGTAATAAATCTTGTCATATGGGATAATCATGCAACATTTATAGGAACAATTGGGCTGTTAATTTGCATGCTTGGTGGAATTCTTTATCAACAGTCAGTGTCTAAGCCTCCACCCACTGCTTCTGAACCTGCCACAAATGATGATGAAGAACAGCTGTTAGAGTTACCATCCTCAGAATTGAAGGCCTTTGGAAATGAGGTGGTCCCAACAGGCCCTAAGTAA___CTTTGTTTTCTCTGTTAAATGTGAGAGCAAACTAGTTTTCAGGTCATAACTGGGAAGGAACATGTTTTTTGGAAGAGTAATTTCTTGGTGAATGAAGTTTCAGTTTGTAAGTTGACCATCTAGACTTGTACTTCTCAAAGTACAAGTATGGATTTGGTTTATTTTCAGCTTATGCTGAAATATTGGTGAATGATAATATTGGGTGTCCTTGCCTGCCCAGTGAGTACTTTGTATTCATTTAAAAAGTGTCTCCTTATCACTTAAGGACACTCTGTAAGGGAGACAGAAAGTTCCAAGTCAAGAACCAT

Fln Alignment:

Contig2438___SIINKWEIMKFPYPGALTALQYLTSVVAVLILGQLNLLEHDKVVLHTMWRFLPAALIFYLSLFTNSELLLHANVDTFIVFRSAVPIFVAIGESLYLKQPWPSAKTWCSLAIIFGGGVLYVVTDYQFTIMAYSWALAYLVSMSIDFVYIKHVVMTIGLNTWGLVLYNNLEAFLLFPLELIIMGELKKLKQDSTNESDWHSVGVLLPVXXXXXXXXXXXXXXXXXRKVISATGFTVLGIVNKLLTVVINLVIWDNHATFXXXXXXXXXXXXXXXYQQSVSKPPPTASE
Q9S845_________________SIINKWAIMKFPYPGALTAMQYFTSAAGVLLCAQMKLIEHDSLNLLTMWRFLPAAMIFYLSLFTNSELLLHANVDTFIVFRSAVPIFVAIGETLFLHQPWPSVKTWGSLATIFGGSLLYVFTDYQFTIAAYSWALAYLVSMTIDFVYIKHVVMTIGLNTWGLVLYNNLEALLLFPLELLIMGELKKIKHEITDETDWYSLQVVLPVGLSCLFGLAISFFGFSCRRAISATGFTVLGIVNKLLTVVINLMVWDKHSTFVGTLGLLVCMFGGVMYQQSTIKKPNATQE

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
268	33	66			1.0
360	20		80		0.995493
361	20			80	0.995493
367	14	85			0.993533
386		80		20	0.995493
503		80		20	0.995493
504		75	25		0.996473
515	16			83	0.994512
516	16	83			0.994512
910	33	66			0.997452
913	66			33	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain