SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene2411

Length: 1055 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene2411

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4239	14/14

Source	Descriptions	Term	Type	Identity
AutoFact	DEAD-box ATP-dependent RNA helicase 40 [Arabidopsis thaliana] sp\|Q9SQV1.1\|RH40_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 40 gb\|AAF08584.1\|AC011623_17 putative RNA helicase [Arabidopsis thaliana] gb\|AEE74400.1\| DEAD-box ATP-dependent RNA heli	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	56%
Blast2go	dead-box atp-dependent rna helicase 14	-	-	85%

Source	GOs	Term	Type	Identity
Blast2go	ATP catabolic process	GO:0006200	Biological Process	85%
Blast2go	RNA binding	GO:0003723	Molecular Function	85%
Blast2go	ATP-dependent RNA helicase activity	GO:0004004	Molecular Function	85%
Blast2go	ATP binding	GO:0005524	Molecular Function	85%
Blast2go	vacuole	GO:0005773	Cellular Component	85%

Source	InterPros	Term	Type	Identity
Sma3	Neuraxin/MAP1B repeat	IPR000102	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3	WW/Rsp5/WWP	IPR001202	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Carbohydrate/puine kinase, PfkB, conserved site	IPR002173	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	ADC synthase	IPR005801	-	-
Sma3	DNA polymerase alpha/epsilon, subunit B	IPR007185	-	-
Sma3	Protein-tyrosine phosphatase-like, PTPLA	IPR007482	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3	RNA helicase, DEAD-box type, Q motif	IPR014014	-	-
Sma3		IPR014021	-	-
Sma3	Chorismate binding, C-terminal	IPR015890	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Intermediate filament protein, conserved site	IPR018039	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PQ26

Fln msg: Distance to subject end: 135 aas, your sequence is shorter than subject: 351 - 593

Fln protein: CLGPRQAAEPYKYVPNGTNYPNPNVKLAPRMQGNAELPNSTAVDAYRRQHEVSAQGDNVPAPFMSFDQTGFPPEILRELQNAGFSSPTPIQAQSWPIAMQNQDIVAIAKTGSGKTLGYLLPAFIHLRRRCNNTQMGPTVLVLAPTRELATQIQEEAIKFGRSSRITCTCLYGGAPKGPQLRDLERGVDIVVATPGRLNDILETKKVNLRQVSFLALDEADRMLDMGFEPQIRKIVNEIPRQRQTLMYTATWPKEVRKIAGDLLVNPVQVTIGTIDELAANNSITQFVEIVAPMDKQRRLEQILRGQEPGSRIIIFCSTKRMCDNLSRSLGRQFGAIAIHGDKSQGERDWDI

Protein Length: 352

Fln nts: AATGTCTTGGCCCACGCCAAGCTGCCGAACCGTATAAGTATGTTCCAAATGGAACCAATTACCCAAATCCAAACGTCAAACTGGCACCGAGGATGCAGGGAAATGCTGAACTCCCTAATTCCACAGCGGTTGATGCCTATCGCAGGCAACACGAGGTTTCAGCCCAGGGGGATAATGTTCCTGCTCCTTTTATGTCATTTGACCAAACTGGATTTCCACCGGAAATTCTTCGAGAGCTACAAAATGCAGGCTTCTCCTCTCCCACTCCAATACAAGCACAATCATGGCCTATTGCTATGCAGAATCAGGACATTGTAGCCATTGCCAAAACAGGTTCTGGGAAAACATTAGGTTATCTATTACCTGCATTTATTCATCTTCGACGCCGTTGTAACAACACTCAGATGGGCCCAACGGTACTTGTTTTGGCACCAACGCGAGAGCTTGCAACTCAAATACAAGAAGAAGCAATAAAGTTTGGTAGATCATCAAGGATTACATGCACGTGCTTATATGGAGGAGCACCAAAAGGCCCACAACTAAGGGATTTGGAACGTGGAGTTGATATTGTTGTTGCCACTCCGGGAAGACTAAATGACATTTTAGAAACTAAAAAAGTAAACCTTCGGCAGGTTTCGTTCTTGGCACTTGATGAAGCTGATCGTATGCTTGATATGGGATTTGAGCCACAGATTCGGAAAATTGTGAATGAAATCCCGCGTCAAAGGCAAACCTTGATGTATACAGCAACTTGGCCCAAGGAGGTTCGGAAGATAGCTGGTGATTTGCTGGTTAATCCTGTTCAGGTTACAATAGGGACTATTGATGAGTTAGCTGCGAATAATTCCATCACCCAGTTTGTTGAAATAGTTGCGCCAATGGACAAGCAAAGAAGATTGGAACAAATCCTTAGGGGACAGGAGCCAGGGTCAAGAATTATAATATTTTGCTCAACAAAAAGGATGTGTGACAATCTTTCTCGAAGTCTTGGTCGACAATTTGGCGCTATTGCTATCCACGGGGACAAGTCTCAAGGAGAGAGAGATTGGGACATT

Fln Alignment:

Contig2411___VDAYRRQHEVSAQGDNVPAPFMSFDQTGFPPEILRELQNAGFSSPTPIQAQSWPIAMQNQDIVAIAKTGSGKTLGYLLPAFIHLRRRCNNTQM-GPTVLVLAPTRELATQIQEEAIKFGRSSRITCTCLYGGAPKGPQLRDLERGVDIVVATPGRLNDILETKKVNLRQVSFLALDEADRMLDMGFEPQIRKIVNEIPRQRQTLMYTATWPKEVRKIAGDLLVNPVQVTIGTIDELAANNSITQFVEIVAPMDKQRRLEQILRGQEPGSRIIIFCSTKRMCDNLSRSLGRQ-FGAIAIHGDKSQGERDW
C0PQ26_________________VSAYRKRREITVEGRDVPKPLRSFREASFTDHVLRELERAGFSEPTAIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHINAQPHLAHGDGPIVLVLAPTRELAVQIQQESVKFGTSSKIKSTCIYGGAPKGPQIRDLQRGVEIVIATPGRLIDMLEARHTNLRRVTYLVLDEADRMLDMGFEPQIRKIITQIRPDRQTLYWSATWPREVENLARQFLHNPYKVIIGSAD-LKANHAISQIVEVVSEYEKYPRLIKLLEEIMDGSRILIFMETKKGCDQVTKQLRMDGWPALSIHGDKSQAERDW

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
266	20	80			0.995493
268		80	20		0.995493
269		80		20	0.995493
470			75	25	0.996473
471		75	25		0.996473
472	75			25	0.996473
769	14			85	0.993533
770	14	85			0.993533
771			85	14	0.993533
773	85			14	0.993533
957	66			33	0.997452
958		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain