SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene2402

Length: 233 nt

UniGene Fasta

>biog3_v1.0_unigene2402
AATGTCTGTGTTCATTTGCCCCATTTCTCTCGAGCCTATGCAGGATCCTGTGACCCTTTGTACAGGCCAGACCTATGAAAGATCCAATATTTTGCAGTGGTTTCAAATAGGGCATAATTACATCTGTCCAACAACTATGCAGGAGCTCTGGGATGTCTCTCTTACTCCCAACACGACTCTATGTCATCTCATCTATAAGTGGTTTTCGCAGAGGTATATGATGCAGAAGAAAC

Ace file of the UniGene biog3_v1.0_unigene2402

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5039	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	E3 ubiquitin ligase PUB14, putative n=1 Tax=Ricinus communis RepID=B9R6X8_RICCO	-	-	9.94922e-44	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	54%
Blast2go	u-box domain-containing protein 30-like	-	-	0.0	78%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	0.0	78%

Source	GOs	Term	Type	Identity
Blast2go	protein ubiquitination	GO:0016567	Biological Process	78%
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	78%
Blast2go	binding	GO:0005488	Molecular Function	78%
Blast2go	ubiquitin ligase complex	GO:0000151	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	U box domain	IPR003613	-	-
Sma3	Cation/H+ exchanger	IPR006153	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Armadillo-like helical	IPR011989	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PSB5

Fln msg: Distance to subject end: 300 aas, your sequence is shorter than subject: 77 - 497

Fln protein: MSVFICPISLEPMQDPVTLCTGQTYERSNILQWFQIGHNYICPTTMQELWDVSLTPNTTLCHLIYKWFSQRYMMQKK

Protein Length: 78

Fln nts: AATGTCTGTGTTCATTTGCCCCATTTCTCTCGAGCCTATGCAGGATCCTGTGACCCTTTGTACAGGCCAGACCTATGAAAGATCCAATATTTTGCAGTGGTTTCAAATAGGGCATAATTACATCTGTCCAACAACTATGCAGGAGCTCTGGGATGTCTCTCTTACTCCCAACACGACTCTATGTCATCTCATCTATAAGTGGTTTTCGCAGAGGTATATGATGCAGAAGAAAC

Fln Alignment:

Contig2402___FICPISLEPMQDPVTLCTGQTYERSNILQWFQIGHNYICPTTMQELWDVSLTPNTTLCHLIYKW
C0PSB5_________________FRCPISLELMQDPVIVATGQTYDRLCIQRWLDLGHK-TCPKTQQVLPHMTLTPNYVLRSLIAQW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain