SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene2378

Length: 857 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene2378 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9530	9/9

Source	Descriptions	Term	Type	Identity
AutoFact	RecName: Full=Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic; AltName: Full=[Ribulose-bisphosphate carboxylase]-lysine N-methyltransferase; Short=RuBisCO LSMT; Short=RuBisCO methyltransferase; Short=rbcMT;	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	set domain-containing protein	-	-	72%

Source	ECs	Term	Type	e value	Identity
Blast2go	[Ribulose-bisphosphate carboxylase]-lysine N-methyltransferase.	EC:2.1.1.127	-	0.0	72%

Source	GOs	Term	Type	Identity
Blast2go	methylation	GO:0032259	Biological Process	72%
Blast2go	[ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	GO:0030785	Molecular Function	72%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	72%

Source	InterPros	Term	Type	e value	Identity
Sma3	Rubisco LS methyltransferase, substrate-binding domain	IPR015353	-	0.0	-
Sma3	SET domain	IPR001214	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
268		75		25	0.996473
449	33		66		0.997452
452		66	33		0.997452
585	14			71	0.984337
588			14	85	0.993533
589		83		16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain