SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene2374

Length: 1102 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene2374

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene25533	1/27
SustainPine v2.0	sp_v2.0_unigene26170	16/27
SustainPine v2.0	sp_v2.0_unigene32292	10/27

Source	Descriptions	Term	Type	Identity
AutoFact	putative RNA-binding protein RBP37 [Oryza sativa Japonica Group] dbj\|BAG24017.1\| RNA-binding protein [Oryza sativa Japonica Group] dbj\|BAG95850.1\| unnamed protein product [Oryza sativa Japonica Group] gb\|EEE67936.1\| hypothetical protein OsJ_25822 [Oryza s	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	75%
Blast2go	rna-binding protein	-	-	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	RNA binding	GO:0003723	Molecular Function	0.0	79%

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Ataxin-2, C-terminal	IPR009818	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNG9

Fln msg: W1: There is no M at the beginning,

Fln protein: TLPLRVVQHQAVLANPALSASEQHQQRANGAASHEKAGLGTENAAASQDFSRDMRELEDLLSKLNPMAKEFVPPSLVNHSPAVSFFNAFMKKNNYQGKRRMNSRTNLAQQEDSIRRTVYVSDIDQQVTEEQLAALFINCGQVVDCRVCGDPNSVLRFAFVEFTDEESARAALSLAGTMLGYYPVRVLPSKTAIAPVNPTFLPRSEDEREMCARTIYCTNIDKKVSQADVKLFFESLCGEVSRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGAILGSLPIRVSPSKTPVRPRNPRSLMH*

Protein Length: 303

Fln nts: AATGTAATGTAAATATTCAAATAAACCCTTCCACTCAGGGTCGTCCAGCACCAGGCCGTGTTGGCAAACCCTGCGCTTTCTGCCTCCGAACAACATCAACAACGCGCGAATGGTGCTGCCTCGCATGAGAAGGCAGGACTGGGGACTGAAAATGCCGCGGCTTCACAGGACTTCAGTCGTGACATGCGGGAATTGGAAGATCTGCTCTCGAAGTTAAACCCTATGGCAAAGGAGTTTGTGCCGCCTTCCCTTGTTAATCATTCGCCCGCTGTTTCCTTCTTCAATGCTTTTATGAAGAAAAACAACTATCAAGGGAAACGAAGAATGAATAGCAGAACTAATTTAGCCCAGCAAGAAGATAGCATTAGAAGAACAGTCTATGTTTCAGACATTGATCAACAGGTGACTGAAGAGCAACTTGCAGCTCTTTTTATTAATTGTGGGCAGGTTGTTGATTGTCGTGTGTGTGGTGATCCAAATTCAGTTCTCCGTTTTGCCTTTGTAGAATTTACTGATGAGGAGAGTGCAAGAGCAGCTTTGAGTCTTGCTGGGACCATGTTGGGATACTATCCCGTGAGGGTCTTGCCTTCTAAAACTGCTATTGCCCCAGTAAACCCAACATTTCTTCCGAGGTCAGAAGATGAGCGTGAAATGTGTGCACGGACAATCTATTGCACAAATATTGACAAGAAGGTTTCCCAAGCGGATGTGAAACTCTTCTTTGAGTCACTTTGTGGTGAGGTTTCTCGTTTGAGACTCTTAGGAGATTATCATCATTCAACTCGTATAGCCTTTGTTGAGTTTGTTATGGCTGAGAGTGCTATTGCTGCTTTAAACTGCAGTGGTGCTATTTTGGGATCTCTACCCATAAGGGTAAGTCCATCGAAGACACCAGTGAGACCTCGCAATCCCCGTTCACTAATGCATTGA___ACGTGGCTATTTGAATCCTAACTTATACTTTCTAACAACTATCCCATGAAAAGCAGCATTTTTGTAGTCACATGGTGCATCGGAGAGTAAAACCTAGCTTTTGGTTTAAAGTGGATGTCCATCAGGATGGCAGTATCATTTGATTATTGTACAATAAACATGAAAGTATCTA

Fln Alignment:

Contig2374___ASHEKAGLGTENAAASQDFSRDMRELEDLLSKLNPMAKEFVP-----PSLVNHSPAVSFFNAFMKKNNY-QGKRRMNSRTNLAQQEDSIRRTVYVSDIDQQVTEEQLAALFINCGQVVDCRVCGDPNSVLRFAFVEFTDEESARAALSLAGTMLGYYPVRVLPSKTAIAPVNPTFLPRSEDEREMCARTIYCTNIDKKVSQADVKLFFESLCGEVSRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGAILGSLPIRVSPSKTPVRPRNPRSLMH
A9NNG9_________________ASYGKRTPDLARAENKGGFNGDMRELVDLLSKLNPLAEEFIPQPHRSPSFIINGNGSFANNSRRKKNNFNQGKRRLNGRNIRAQQEDSVRRTVYVCDIDHQVTEEQLAALFINCGQVIDCRICGDPNSVLRFAFIEFADEQGARAALSLAGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCARTIYCTNIDKKVSQVEVRMFFESLCGEVSRLRLLGDHVHSTRIAFVEFVMAESAILALNCSGAIVGSLPIRVSPSKTPVRPRIPHPTMH

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
75			75	25	0.996473
207		50		50	1.0
237	16			83	0.994512
238	16		83		0.994512
241		83		16	0.994512
299	80			20	0.995493
373	88			11	0.923564
379	22	77			0.999999
418	83	16			0.999991
419	16	83			0.999991
559	10		90		0.90298
568		77		22	0.999999
624	16			83	0.994512
625		16		83	0.994512
626	16	83			0.994512
652	80	20			0.995493
655			80	20	0.995493
657		25		75	0.996473
658	25		75		0.996473
660			75	25	0.996473
769		33	66		0.997452
780	33			66	0.997452
782		66	33		0.997452
783	66			33	0.997452
889	25		75		0.996473
903	20		80		0.995493
905		80		20	0.995493
906		80	20		0.995493
941	20		80		0.995493
942	20	80			0.995493
944	80		20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain