SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene2369

Length: 357 nt

UniGene Fasta

>biog3_v1.0_unigene2369
AATGTTTTAGAAAATGCTCATACAAATTTTGTGTTCTTCAACACGGGAGGATTATAAGGCTCCCTCAGGGGCAGAATCTGTGATTGCAACTACATGGGCTGTGGTAAATCGCTGTCGTACTTTGCCAAAAGCTTTTCTGCGCTTTAAGTTCGTCAGATCTGCTGCGGCTCCAATCTTGGCAGAGTATCTTGATGTCCTGCTTCAGCGGTGTCAAGAAGCTGAAGCTTTGACTGCTTTGGCAGATGATGAGGCTATGGCAAAAGTTGCCATCTCCATCAATGCTGCTCGGTACTGTGAGTACATTGTGAAGGAATGGTGTGAGGATATATTCTTTTTGGAGCTTCAGCTTTCCCAAGG

Ace file of the UniGene biog3_v1.0_unigene2369

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11937	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RINT-1 / TIP-1 domain-containing MAG2 protein [Arabidopsis thaliana] emb\|CAB41853.1\| putative protein [Arabidopsis thaliana] gb\|AEE78320.1\| RINT-1 / TIP-1 domain-containing MAG2 protein [Arabidopsis thaliana]	-	-	9.99967e-42	55%
FL-Next	tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss).	-	-	0.0	54%
Blast2go	protein	-	-	0.0	75%

Source	GOs	Term	Type	Identity
Blast2go	protein targeting to vacuole	GO:0006623	Biological Process	75%
Blast2go	ER to Golgi vesicle-mediated transport	GO:0006888	Biological Process	75%
Blast2go	cytosol	GO:0005829	Cellular Component	75%
Blast2go	extrinsic to endoplasmic reticulum membrane	GO:0042406	Cellular Component	75%

Source	InterPros	Term	Type	Identity
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Kelch repeat type 1	IPR006652	-	-
Sma3	RINT-1/TIP-1	IPR007528	-	-
Sma3	Galactose oxidase, beta-propeller	IPR015916	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D8R205

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 222 aas, your sequence is shorter than subject: 118 - 791

Fln protein: MF*KMLIQILCSSTREDYKAPSGAESVIATTWAVVNRCRTLPKAFLRFKFVRSAAAPILAEYLDVLLQRCQEAEALTALADDEAMAKVAISINAARYCEYIVKEWCEDIFFLELQLSQ

Protein Length: 119

Fln nts: AATGTTTTAGAAAATGCTCATACAAATTTTGTGTTCTTCAACACGGGAGGATTATAAGGCTCCCTCAGGGGCAGAATCTGTGATTGCAACTACATGGGCTGTGGTAAATCGCTGTCGTACTTTGCCAAAAGCTTTTCTGCGCTTTAAGTTCGTCAGATCTGCTGCGGCTCCAATCTTGGCAGAGTATCTTGATGTCCTGCTTCAGCGGTGTCAAGAAGCTGAAGCTTTGACTGCTTTGGCAGATGATGAGGCTATGGCAAAAGTTGCCATCTCCATCAATGCTGCTCGGTACTGTGAGTACATTGTGAAGGAATGGTGTGAGGATATATTCTTTTTGGAGCTTCAGCTTTCCCAAGG

Fln Alignment:

Contig2369___DYKAPSGAESVIATTWAVVNRCRTLPKAFLRFKFVRSAAAPILAEYLDVLLQRCQXXXXXXXXXXXXXXXKVAISINAARYCEYIVKEWCEDIFFLELQLSQ
D8R205_________________EFKPPLAAYRLTSAAWNLVDRCRTLPEASQRLQFVRKTALPVLDEFIDELLQRCQESEAVTALADEPSMIKVGVCLNAARYCENTVRDWCEDFFFLELRLAE

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
199	25		75		0.996473
200	25	75			0.996473
202			25	75	0.996473
203		75		25	0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain