SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene2359

Length: 512 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene2359
AGAGTCAATCATTGATCAGAATAGGCACTTATGTATGCCTAATGATGCAGGCGTGCTGCTGTTGCAAACTGATACTGCAAAGGATGCAAGGAATCCTCAAGAACTCAGAGCAGTGGAGCTCGTGGCTGCATATTCATCTTTATCTTTTGGCGTGGGATACTTTGGGAACTCAATGGATAAACCTAAGGTTTCTATTCTTAGACGCTCCAAGGCTACAAATGAAAAGGACATTAACTTGTTTGCAGCATGCTTTGATGTGACTAAATAGATATATGGTGTTGTAGAAGTTTGATAAAAGATGAATCAATATATAGATCGTGACCTCCTTCCATTGGAAAATACACTTGGCCATCGATAAAAGGTCATTCACCATTATCTAATGTTGTTGTTGATGCTAACAATATAGGTCACCTTAGATAGCGTTCTTGGAACATTTCATAAGTTAATGAAAACACAACTATTAAATTATTTTGAGCTACTAGATTCTCAAATTGATTATTCTGAAAGTGTAA

Ace file of the UniGene biog3_v1.0_unigene2359 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3492	4/4

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative isoaspartyl peptidase/L-asparaginase 4 subunit beta [Arabidopsis thaliana] sp\|O65268.3\|ASPG4_ARATH RecName: Full=Probable isoaspartyl peptidase/L-asparaginase 4; AltName: Full=L-asparagine amidohydrolase 4; Contains: RecName: Full=Probable isoasp	-	-	1.4013e-45	53%
FL-Next	sp=Probable isoaspartyl peptidase/L-asparaginase 4; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	50%
Blast2go	isoaspartyl peptidase l-asparaginase 4 subunit beta	-	-	0.0	68%

Source	GOs	Term	Type	e value	Identity
Blast2go	hydrolase activity	GO:0016787	Molecular Function	0.0	68%

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase T2, asparaginase 2	IPR000246	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: O65268

Fln msg: your sequence is shorter than subject: 89 - 408

Fln protein: ESIIDQNRHLCMPNDAGVLLLQTDTAKDARNPQELRAVELVAAYSSLSFGVGYFGNSMDKPKVSILRRSKATNEKDINLFAACFDVTK*

Protein Length: 90

Fln nts: AGAGTCAATCATTGATCAGAATAGGCACTTATGTATGCCTAATGATGCAGGCGTGCTGCTGTTGCAAACTGATACTGCAAAGGATGCAAGGAATCCTCAAGAACTCAGAGCAGTGGAGCTCGTGGCTGCATATTCATCTTTATCTTTTGGCGTGGGATACTTTGGGAACTCAATGGATAAACCTAAGGTTTCTATTCTTAGACGCTCCAAGGCTACAAATGAAAAGGACATTAACTTGTTTGCAGCATGCTTTGATGTGACTAAATAG___ATATATGGTGTTGTAGAAGTTTGATAAAAGATGAATCAATATATAGATCGTGACCTCCTTCCATTGGAAAATACACTTGGCCATCGATAAAAGGTCATTCACCATTATCTAATGTTGTTGTTGATGCTAACAATATAGGTCACCTTAGATAGCGTTCTTGGAACATTTCATAAGTTAATGAAAACACAACTATTAAATTATTTTGAGCTACTAGATTCTCAAATTGATTATTCTGAAAGTGTAA

Fln Alignment:

Contig2359___AGVLLLQTDTAKDARNPQ-ELRAVELVAAYSSLSFGVGYFGNSMDKPKVSILRRSKATNEKDINLFAACFDV
O65268_________________AGILVVQADASVVVPGSKPELNAVEIAAAYSSLSFGVGYYGNSIEKPKISILRTRRQMSEAGVDHFEARIDL

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
124	66			33	0.997452
125		33		66	0.997452
126	33		66		0.997452
127	33			66	0.997452
268			80	20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain