SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene2350

Length: 459 nt

UniGene Fasta

>biog3_v1.0_unigene2350
AATGTGGAAAGCATAATGAGAAAAGAGAAAGTTATGGTGATGCTATAATTATTGACCCATGGGGAACTGTTGTTGCTCGTTGCTCAGATCGTTTATCAACAGGTATAGCGGTCGCTGAGATTGATCCAGCTTTTTTAGATTCTGTGAGGATACGCATGCCCATTTCTGAGCATCGTAGACCAGACATTTATGGCAAAAGCTCATCGTCGACGACTCCAGAAACCATCACCTTCCTATAGACATATTTTGGATTTAAATCTTTACTAACGGCTATTCAAGGTTGGAATTGATTGATGTTGTTCAAGTCATCACTCGGCGTGGGGTTTAGAATTCTTAGTTTGGGAAAAATAGGCTGGAATTGATTAATGTTGTTCATTGGTTTGGGAAAAATAGTGATTATTTCGTGCGATTTAATTCAGTTTATGAATGATTATGGATAGAAGTACTGAAATTAATATC

Ace file of the UniGene biog3_v1.0_unigene2350

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2558	8/8

Source	Descriptions	Term	Type	Identity
AutoFact	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein [Arabidopsis thaliana] gb\|AAK49620.1\|AF372904_1 AT4g08790/T32A17_100 [Arabidopsis thaliana] gb\|AAM91374.1\| At4g08790/T32A17_100 [Arabidopsis thaliana] gb\|AEE82678.1\| Nitrilase	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Blast2go	nitrilase homolog 1-like	-	-	71%

Source	ECs	Term	Type	e value	Identity
Blast2go	Nitrilase.	EC:3.5.5.1	-	0.0	71%

Source	KEGGs	Term	Identity
Blast2go	Tryptophan metabolism	00380	71%
Blast2go	Cyanoamino acid metabolism	00460	71%
Blast2go	Aminobenzoate degradation	00627	71%
Blast2go	Styrene degradation	00643	71%
Blast2go	Nitrogen metabolism	00910	71%
Blast2go	Metabolic pathways	01100	71%

Source	GOs	Term	Type	Identity
Blast2go	response to cadmium ion	GO:0046686	Biological Process	71%
Blast2go	nitrogen compound metabolic process	GO:0006807	Biological Process	71%
Blast2go	nitrilase activity	GO:0000257	Molecular Function	71%
Blast2go	plastid	GO:0009536	Cellular Component	71%

Source	InterPros	Term	Type	e value	Identity
Sma3	Nitrilase/cyanide hydratase	IPR003010	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NR10

Fln msg: your sequence is shorter than subject: 79 - 328

Fln protein: CGKHNEKRESYGDAIIIDPWGTVVARCSDRLSTGIAVAEIDPAFLDSVRIRMPISEHRRPDIYGKSSSSTTPETITFL*

Protein Length: 80

Fln nts: AATGTGGAAAGCATAATGAGAAAAGAGAAAGTTATGGTGATGCTATAATTATTGACCCATGGGGAACTGTTGTTGCTCGTTGCTCAGATCGTTTATCAACAGGTATAGCGGTCGCTGAGATTGATCCAGCTTTTTTAGATTCTGTGAGGATACGCATGCCCATTTCTGAGCATCGTAGACCAGACATTTATGGCAAAAGCTCATCGTCGACGACTCCAGAAACCATCACCTTCCTATAG___ACATATTTTGGATTTAAATCTTTACTAACGGCTATTCAAGGTTGGAATTGATTGATGTTGTTCAAGTCATCACTCGGCGTGGGGTTTAGAATTCTTAGTTTGGGAAAAATAGGCTGGAATTGATTAATGTTGTTCATTGGTTTGGGAAAAATAGTGATTATTTCGTGCGATTTAATTCAGTTTATGAATGATTATGGATAGAAGTACTGAAATTAATATC

Fln Alignment:

Contig2350___GKHNEKRESYGDAIIIDPWGTVVARCSDRLSTGIAVAEIDPAFLDSVRIRMPISEHRRPDIYGKSSSSTTPETITFL
A9NR10_________________GKHNEKRESYGDAMIIDPWGTIVARCPDRLSTGIAVAEIDPAFLDSMRMRMPISEHRRPDIYGKSSLSVTAETISSL

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
281	14			85	0.993533
282	14			85	0.993533
283			85	14	0.993533
285	85			14	0.993533
349		33		66	1.0
377	20			80	0.995493
378		20	80		0.995493
379	20		80		0.995493
390	50	25			0.995533
406	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain