SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene2332

Length: 441 nt

UniGene Fasta

>biog3_v1.0_unigene2332
AATGTCCAATGACAACGGAGAAGGTGGAACATTTGCTCTGTATTCATTACTCTGTCGGCATGTTAAAGTGAACACTATTCCGAATCAACACCGCACAGATGAAGAACTCACAACTTATAGCAGGCGAAAGATTGAAGATAAGTCATTTGCTGCAAGAACAAAGAAATGGCTGGAAGCAAAAGTTGACCGTCAAAATGCACTTCTGCTTCTTGTACTTGTTGGCACTTGCATGGTCATCGGTGATGGAATTTTTACTCCTGCTATCTCAGTCCTTTCATCTGTTGGTGGTATCAAGGTAGACCACCCTAACATGAAAACTGCTGTAGTTGTGGCAGTTGCAGTGCTCATCTTGGTTATTCTATTTAGCGTACAGCATTATGGTACAGGCAAAGTTGGATGGCTATTTGCCCCAGCAGTTCTTCTTTGGTTCCTATGCATTGG

Ace file of the UniGene biog3_v1.0_unigene2332

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1600	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	putative potasium transporter [Oryza sativa Japonica Group]	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	83%
Blast2go	potassium transporter	-	-	83%

Source	GOs	Term	Type	Identity
Blast2go	pollen development	GO:0009555	Biological Process	83%
Blast2go	potassium ion transmembrane transporter activity	GO:0015079	Molecular Function	83%
Blast2go	plasma membrane	GO:0005886	Cellular Component	83%
Blast2go	potassium ion transmembrane transport	GO:0071805	Biological Process	83%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, NF-X1-type	IPR000967	-	-
Sma3	Single-stranded nucleic acid binding R3H	IPR001374	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Multicopper oxidase, copper-binding site	IPR002355	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	K+ potassium transporter	IPR003855	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3		IPR018519	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P149

Fln msg: STOP codon was not found. Distance to subject end: 39 aas, your sequence is shorter than subject: 146 - 225

Fln protein: MSNDNGEGGTFALYSLLCRHVKVNTIPNQHRTDEELTTYSRRKIEDKSFAARTKKWLEAKVDRQNALLLLVLVGTCMVIGDGIFTPAISVLSSVGGIKVDHPNMKTAVVVAVAVLILVILFSVQHYGTGKVGWLFAPAVLLWFLCI

Protein Length: 147

Fln nts: AATGTCCAATGACAACGGAGAAGGTGGAACATTTGCTCTGTATTCATTACTCTGTCGGCATGTTAAAGTGAACACTATTCCGAATCAACACCGCACAGATGAAGAACTCACAACTTATAGCAGGCGAAAGATTGAAGATAAGTCATTTGCTGCAAGAACAAAGAAATGGCTGGAAGCAAAAGTTGACCGTCAAAATGCACTTCTGCTTCTTGTACTTGTTGGCACTTGCATGGTCATCGGTGATGGAATTTTTACTCCTGCTATCTCAGTCCTTTCATCTGTTGGTGGTATCAAGGTAGACCACCCTAACATGAAAACTGCTGTAGTTGTGGCAGTTGCAGTGCTCATCTTGGTTATTCTATTTAGCGTACAGCATTATGGTACAGGCAAAGTTGGATGGCTATTTGCCCCAGCAGTTCTTCTTTGGTTCCTATGCATTGG

Fln Alignment:

Contig2332___SNDNGEGGTFALYSLLCRHVKVNTIPNQHRTDEELTTYSRRKIEDKSFAARTKKWLEAKVDRQNALLLLVLVGTCMVIGDGIFTPAISVLSSVGGI
A9P149_________________ANDNGEGGTFALYSLLCRHAKVNTIPNQDRTDEELTTYSRQTIKDKSFAARTKKWLEGKVYRKNALLLLVLIGTCMVIGDGIFTPAISGHASLSSI

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
225	25	75			0.996473
227			25	75	0.996473
228			75	25	0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain