SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene2327

Length: 1297 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene2327

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10795	20/20

Source	Descriptions	Term	Type	Identity
AutoFact	E3 ubiquitin protein ligase RIN2 [Arabidopsis thaliana] ref\|NP_849552.1\| E3 ubiquitin protein ligase RIN2 [Arabidopsis thaliana] sp\|Q8VYC8.1\|RIN2_ARATH RecName: Full=E3 ubiquitin protein ligase RIN2; AltName: Full=AMF receptor-like protein 1A; AltName: Fu	-	-	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	48%
Blast2go	protein	-	-	65%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	0.0	65%

Source	GOs	Term	Type	Identity
Blast2go	protein ubiquitination	GO:0016567	Biological Process	65%
Blast2go	positive regulation of plant-type hypersensitive response	GO:0034052	Biological Process	65%
Blast2go	metal ion binding	GO:0046872	Molecular Function	65%
Blast2go	protein binding	GO:0005515	Molecular Function	65%
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	65%
Blast2go	plasma membrane	GO:0005886	Cellular Component	65%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Ubiquitin system component Cue	IPR003892	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NLN0

Fln msg: atg_distance in limit (1-15): atg_distance = 1, No stop codon before M and M found is too far from subject M, your sequence is shorter than subject: 309 - 334

Fln protein: MFQGLAKDRLERLNASPSATPWAHLRVFSVLVLVLLSDLFWIRLCTMVSKGAGTSTFWLLLFEPLSIAFETLQAVMVHGLQLIDTWHRHTADDTVHCQGSLPSDRSAAGASWEWKGTIIRNCGFFMEVVTLLMAFGHCLHIWWLRGLAFQLVDAVLFLNLRALLSAILKRIKGFMRLRTAMNTLQGALPDATQEELRAYDDECAICKEPMARAKRLPCGHLFHLSCLRSWLDQGLGETYSCPTCRRPLFTGSSRTPANSTVGHQLVEGEQLVRHINAGADALSQNQPEISYQRAHLLLNGGILLAWAC*

Protein Length: 310

Fln nts: GGGCAGTTGTCCTCGATAGAAACACGGAAAGTTGTTGAACGCCTTATAAACTATATACTTTTCAAGGGGATTTTTCTCACATGGGTAGTACAACCAGATATCGTGCAAATAGCCTTATGGTTGACTTGGTTTTCAGTTCTGGGGTCCCTGAAGATGTTTCAGGGGCTGGCAAAAGATCGCCTTGAGCGGTTGAATGCATCTCCTTCTGCAACACCTTGGGCACATTTGCGAGTGTTTTCAGTACTAGTATTGGTACTTCTGTCGGATTTATTTTGGATTCGTCTGTGTACGATGGTATCTAAGGGTGCTGGAACCAGCACATTTTGGCTATTGCTCTTTGAGCCTCTTAGCATTGCCTTTGAAACACTGCAGGCAGTTATGGTGCATGGCTTGCAGCTCATTGACACATGGCATCGACATACTGCAGATGACACAGTGCATTGTCAAGGATCACTGCCCTCTGATAGATCTGCAGCAGGTGCCTCATGGGAATGGAAAGGAACTATTATTAGGAACTGTGGATTTTTCATGGAAGTTGTAACCTTGTTGATGGCTTTTGGACACTGTTTGCACATTTGGTGGCTTCGGGGTCTTGCATTCCAACTTGTAGATGCCGTGCTTTTCTTGAATCTGCGTGCACTTTTGAGTGCAATCTTAAAGCGGATCAAGGGATTTATGAGGTTGAGAACAGCAATGAATACTCTACAGGGAGCATTACCTGATGCCACTCAAGAAGAATTGCGTGCATATGATGACGAATGTGCTATTTGCAAGGAACCTATGGCCAGGGCCAAAAGACTACCTTGTGGACACCTTTTCCATCTTTCATGTCTGAGATCCTGGTTGGACCAAGGCCTTGGAGAGACATACTCATGTCCAACCTGTAGAAGGCCACTGTTCACAGGTAGCTCCAGGACACCTGCAAATTCAACTGTTGGGCACCAGTTGGTGGAAGGTGAACAACTGGTCAGGCATATAAATGCAGGAGCTGATGCATTGTCTCAAAATCAGCCTGAAATATCATATCAGCGGGCCCATTTACTGCTCAACGGTGGAATTCTGCTGGCATGGGCATGTTGA___GGGGTGTGGGGCTCGACCCTGGATGGACAACTCCCTGGCCAAATGCAGGGCTAGATGGTGCAGGTCCATCCACAGGAATGAGATCCGTGGGATTTGGCAGAGTTCAAATGATGATGAGGCAACTTGCAGATGTTGGTGGAACCTATGTACATAGCACATCATCAGAAGAAAATGCTTTGAGACTTTGGTCTATGGTGCCCCCTGAGGGAAGCTTGAT

Fln Alignment:

Contig2327___DDECAICKEPMA---RAKRLPCGHLFHLSCLRSWLDQGLGETYSCPTCRRPLFT
A9NLN0_________________DTECAVCREHLVVGDKMQELPCKHLFHPNCLKPWLD----EHNSCPICRYELQT

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
346	20			80	0.995493
347	20	80			0.995493
426		20		80	0.995493
437		80		20	0.995493
438	80			20	0.995493
602	25			75	0.996473
605		75	25		0.996473
606	75			25	0.996473
675	20		80		0.995493
678			20	80	0.995493
856	80			20	0.995493
857			80	20	0.995493
983	75	25			0.996473
986			75	25	0.996473
1038	33		66		0.997452
1039	33		66		0.997452
1040		66		33	0.997452
1041		66	33		0.997452
1042		66		33	0.997452
1069	20	80			0.995493
1070	20			80	0.995493
1071			80	20	0.995493
1073		80		20	0.995493
1231	33	66			0.997452
1232		33		66	0.997452
1235	33			33	0.997753

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain