SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene2325

Length: 565 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene2325
AATGTGAATATGCCCTTCAACTTCAGGAAACTGCCATGCTGAACGATCCAGATGAAAACAGTGCTAATCGCCTTTCAGAGATTCCCTTACGCTTTTCTCAGGAAGAGAATTTTGGTGATAGTGCTATTGAGAGGGTTAGTGTTGCTGTAAGTGAAGAAGGTTCAGAAGGTGCAACTGCAAGTACAGTATTTTCACAATTAGTTAATCCTCATGGAAGGTGATCACAGAAATTTTGTGTGTGGTGATTCATTCACCAACTTATGTGAGCTGGCCATTGTGATACAAATTAGTGATCACCTTCAGAAAATCTTAATGCTTCATTGGTCTTCACTCCTAAGACCAAATCTTCAGTTTCGTTTTAAAAGCACTTGCTGCATACCTCACGGGCCACGGCCATCCAAATCCCATATGGATTAATTTTCCTAGATTTTCTTCCTTAATTTTTAAGGTTTGAAATTCTACCTTACAAATATGCACTAAATAGTACATATTTAGTGGCCTTTTCTAATATGTACCTAATATGTAGATTAAGGTGTGAGGTACTATTTAAGATTAAGATTACATT

Ace file of the UniGene biog3_v1.0_unigene2325 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2020	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Receptor-like kinase n=1 Tax=Marchantia polymorpha RepID=A7VM23_MARPO	-	-	77%
FL-Next	sp=Receptor-like protein kinase THESEUS 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	44%
Blast2go	receptor-like protein kinase theseus 1-like	-	-	79%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	79%

Source	GOs	Term	Type	Identity
Blast2go	protein autophosphorylation	GO:0046777	Biological Process	79%
Blast2go	regulation of unidimensional cell growth	GO:0051510	Biological Process	79%
Blast2go	post-embryonic development	GO:0009791	Biological Process	79%
Blast2go	brassinosteroid mediated signaling pathway	GO:0009742	Biological Process	79%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	79%
Blast2go	receptor activity	GO:0004872	Molecular Function	79%
Blast2go	ATP binding	GO:0005524	Molecular Function	79%
Blast2go	plasma membrane	GO:0005886	Cellular Component	79%

Source	InterPros	Term	Type	Identity
Sma3	Histone-like bacterial DNA-binding protein	IPR000119	-	-
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Oxidoreductase, molybdopterin-binding domain	IPR000572	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Isopenicillin N synthase, conserved site	IPR002057	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Peptidase S16, lon N-terminal	IPR003111	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q9LK35

Fln msg: your sequence is shorter than subject: 73 - 855

Fln protein: CEYALQLQETAMLNDPDENSANRLSEIPLRFSQEENFGDSAIERVSVAVSEEGSEGATASTVFSQLVNPHGR*

Protein Length: 74

Fln nts: AATGTGAATATGCCCTTCAACTTCAGGAAACTGCCATGCTGAACGATCCAGATGAAAACAGTGCTAATCGCCTTTCAGAGATTCCCTTACGCTTTTCTCAGGAAGAGAATTTTGGTGATAGTGCTATTGAGAGGGTTAGTGTTGCTGTAAGTGAAGAAGGTTCAGAAGGTGCAACTGCAAGTACAGTATTTTCACAATTAGTTAATCCTCATGGAAGGTGA___TCACAGAAATTTTGTGTGTGGTGATTCATTCACCAACTTATGTGAGCTGGCCATTGTGATACAAATTAGTGATCACCTTCAGAAAATCTTAATGCTTCATTGGTCTTCACTCCTAAGACCAAATCTTCAGTTTCGTTTTAAAAGCACTTGCTGCATACCTCACGGGCCACGGCCATCCAAATCCCATATGGATTAATTTTCCTAGATTTTCTTCCTTAATTTTTAAGGTTTGAAATTCTACCTTACAAATATGCACTAAATAGTACATATTTAGTGGCCTTTTCTAATATGTACCTAATATGTAGATTAAGGTGTGAGGTACTATTTAAGATTAAGATTACATT

Fln Alignment:

Contig2325___EYALQLQETAM-LNDPDENSANRLSEIPLRFSQEENFGDSAIERVSV---AVSEEGSEGATASTVFSQLVNPHGR
Q9LK35_________________EYALQLEETSSALMEPDDNSTNHIPGIPMAPMEPFDNSMSIIDRGGVNSGTGTDDDAEDATTSAVFSQLVHPRGR

SNPs (tot: 3)

Position	A %	G %	T %	Probability
134		66	33	0.997452
135	66	33		0.997452
136	66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain