SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene2306

Length: 1783 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene2306

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18525	31/32

Source	Descriptions	Term	Type	Identity
AutoFact	putative Cdc2-related protein kinase CRK2 [Beta vulgaris]	-	-	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	69%
Blast2go	cyclin-dependent kinase f-4-like	-	-	82%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	MAP kinase, conserved site	IPR003527	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	JNK MAP kinase	IPR008351	-	-
Sma3	MAP kinase, p38	IPR008352	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LR77

Fln msg:

Fln protein: MERYKVIKELGDGTYGSVWKAFNQQTHEIVANKKMKRKYYIWEECMNLREVKSLRKLNHPNIIKLKEVIRENNELFFIFEYMECNLYQIMKERSTPFSETEIIKFCYQILQGLSYMHRNGYFHRDLKPENLLVTSDLIKIADFGLAREVLTSPPYTDYVSTRWYRAPEVLLQSPTYTTAIDMWAVGAILAELFTLHPLFPGESELDEIYKICGVLGTPDYETWPDGMQLAAFRNFIFPQFLPVNLSVLIPHASPEAIDLITRLCSWDPQKRPTAEQALHHPFFLNGMSIPLSLGGHFQDNTCAAEVDTNFHSKKACKAWNGEKESSLECFLGLSLGLKPSLGHLGAMGSQGVGAVKQEVGSSPGCQSNPKQSLFQVLNSRAILPLFCSSPNLNVVPVKSSLPSAYTVNSQVMWPTIAGPPAAAVTVSTLQPSILGDFKIFGKSMGLASQYAGKEAFPFQLDNHI*

Protein Length: 466

Fln nts: AATGTTGATTATCTAGACAGCC_-_ATGGAGCGTTACAAGGTCATAAAAGAGTTGGGGGATGGCACTTATGGAAGTGTATGGAAGGCTTTTAATCAGCAGACACATGAGATAGTAGCTAATAAAAAAATGAAGAGGAAATATTATATCTGGGAAGAGTGTATGAATCTCCGGGAGGTCAAGTCTCTGCGGAAGTTGAACCATCCCAACATTATCAAGCTGAAGGAGGTCATTAGGGAAAATAATGAACTCTTTTTCATATTTGAATACATGGAATGTAATCTGTATCAAATAATGAAAGAGAGATCTACTCCTTTTTCAGAAACAGAAATTATCAAATTTTGCTATCAAATACTGCAAGGGTTATCCTATATGCACAGGAATGGTTATTTTCACCGAGACTTAAAACCAGAGAATTTGTTGGTAACTAGCGACTTGATTAAAATTGCGGATTTTGGGCTGGCAAGGGAAGTTCTCACCAGCCCACCTTATACAGATTATGTTTCAACGAGATGGTATCGTGCTCCAGAAGTCCTGCTGCAATCTCCGACATACACTACTGCAATTGACATGTGGGCAGTTGGGGCGATACTGGCGGAACTCTTCACTTTGCATCCTCTCTTTCCTGGTGAAAGTGAACTGGATGAAATTTACAAGATCTGTGGTGTGCTTGGCACTCCAGATTATGAGACTTGGCCTGACGGCATGCAGCTTGCAGCTTTTAGGAACTTCATCTTTCCCCAGTTTCTACCAGTCAATCTTTCAGTTCTTATTCCCCATGCTAGCCCAGAAGCAATCGATTTGATTACACGTCTATGTTCTTGGGACCCTCAGAAGAGGCCAACAGCAGAGCAGGCACTGCATCATCCTTTCTTCCTTAATGGCATGTCTATTCCTCTTTCTCTTGGGGGACATTTCCAAGATAATACATGTGCAGCAGAGGTAGATACAAATTTTCATTCCAAAAAGGCATGCAAGGCATGGAATGGGGAAAAAGAATCAAGCTTGGAATGCTTCCTCGGTTTGTCTTTGGGGCTCAAGCCAAGCCTTGGTCATCTAGGCGCAATGGGATCTCAAGGTGTGGGAGCAGTTAAGCAGGAAGTGGGGTCCTCTCCAGGGTGTCAGAGTAATCCAAAGCAGTCCCTATTTCAGGTTTTAAACTCAAGAGCAATTCTACCACTATTTTGCTCAAGCCCCAACCTGAATGTGGTTCCAGTCAAGTCCTCTCTACCTTCAGCATATACAGTAAACAGTCAAGTCATGTGGCCAACAATAGCAGGTCCACCTGCTGCTGCAGTTACTGTTTCTACTCTACAGCCAAGCATACTCGGCGATTTTAAGATCTTTGGAAAATCCATGGGGTTGGCTTCACAGTATGCGGGAAAGGAAGCCTTCCCCTTTCAGCTAGATAATCATATTTAG___TTCATGCTTTCTGAACAAAGTAAATTTTTAATGAGTGAAATTCACCATTTTAAGCTGATAGCTTTAGTTCCTACGTGGAATGTATAAATGCACCATTGTCCATAAGGCAAGAGCTTTAATCTGGATTCCAGTATATATACCCAGTTTGGTTTCTAAATTCATTTGTAAATAGTTCCAACTGAGAGAGGATATATTTGAGGTAGATTGGCAAATGGAATTACTGCTCATGAGAACAATTTATTTATGTTAGTGTTCTCATATACAATCCATCTCCGGCATCACCATTTTTACACGATTGGGATGCCGAAGTTTGTGAGGTAAGATTGTAATATTAGACCAGTTGAAAGTCATGCAATTTTGGTCACT

Fln Alignment:

Contig2306___MERYKVIKELGDGTYGSVWKAFNQQTHEIVANKKMKRKYYIWEECMNLREVKSLRKLNHPNIIKLKEVIRENNELFFIFEYMECNLYQIMKERSTPFSETEIIKFCYQILQGLSYMHRNGYFHRDLKPENLLVTSDLIKIADFGLAREVLTSPPYTDYVSTRWYRAPEVLLQSPTYTTAIDMWAVGAILAELFTLHPLFPGESELDEIYKICGVLGTPDYETWPDGMQLAAFRNFIFPQFLPVNLSVLIPHASPEAIDLITRLCSWDPQKRPTAEQALHHPFFLNGMSIPLSL
B8LR77_________________MDRYKVIKELGDGTYGIVWKAINRSTNEIVAIKKMKRKYYSWEECMSLREVKSLRKMNHPNIVKLKEVIRENDHLYFVFEYMECNLYQLMKDNDKLFSESKVRNWCFQLFQALAYMHQHGYFHRDLKPENLLVTKDVIKIADFGLAREVCSQPPFTEYVSTRWYRAPEVLLQSSSYGSAVDMWAMGAIMAELFTLRPLFPGSSEADEIYKICSVIGSPNHQTWSEGLRLATSMQYQFPQFISTHLSTLIPSASAEAIDLMASLCAWDPTKRPTAAESLKHPFFQACVYVPPSL

SNPs (tot: 32)

Position	A %	C %	G %	T %	Probability
249	25			75	0.996473
250	25			75	0.996473
252			25	75	0.996473
253		75		25	0.996473
298	20		80		0.995493
300			80	20	0.995493
301	80		20		0.995493
500	25			75	0.996473
503	75			25	0.996473
504		75		25	0.996473
532	25		75		0.996473
533	25	75			0.996473
537	75			25	0.996473
894	20	80			0.995493
896	20			80	0.995493
897		80		20	0.995493
957	25	75			0.996473
1005	16	83			0.994512
1006	16			83	0.994512
1009			83	16	0.994512
1085	16		83		0.994512
1088		83		16	0.994512
1127		28	71		1.0
1130	71			28	1.0
1149	20			80	0.995493
1152			80	20	0.995493
1153			80	20	0.995493
1435	20		80		0.995493
1436	80	20			0.995493
1438		80		20	0.995493
1439	80			20	0.995493
1457			75	25	0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain