SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene2266

Length: 338 nt

UniGene Fasta

>biog3_v1.0_unigene2266
AATGTTAATATGTTTTCTAGGGACGTTACAGGCAACAGTTCTGAGCTTAGCTCTCGTACGTGATCCTTCACAGTGGGCGTTAGGGGGATTGTGGCATCAGCGGTAGCATATTATGTGCAAGGTCTGTGCATCCGCGTAAAAGGGCCTGTATTTACCACAGCATTCAGTCCGTTGATGATGATAATCGCGGCAATCATGGGATCTGCTATTCTCTCTGAAAACATCTATTTGGGCAGTGTGCTGGGTGGAGTCGTGATCGCAATAGGGTTGTACGCTGTTCTGTGGGGAAAATTGAAGGATGGCAAGGCCTCAACGGATGAAAATTGTCGGAAGCCCTT

Ace file of the UniGene biog3_v1.0_unigene2266

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene34864	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	EamA domain containing protein	-	-	5.0e-08	21%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%
Blast2go	auxin-induced protein	-	-	0.0	67%

Source	InterPros	Term	Type	e value	Identity
Sma3	Drug/metabolite transporter	IPR000620	-	0.0	-
Sma3	Ribosomal protein L29, conserved site	IPR018254	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NWT4

Fln msg: Warning!, your query overlaps and the subject is separated, Distance to subject end: 51 aas, your sequence is shorter than subject: 112 - 392

Fln protein: MLICFLGTLQATVLSLALVRDPSQWALxxIVASAVAYYVQGLCIRVKGPVFTTAFSPLMMIIAAIMGSAILSENIYLGSVLGGVVIAIGLYAVLWGKLKDGKASTDENCRKP

Protein Length: 113

Fln nts: AATGTTAATATGTTTTCTAGGGACGTTACAGGCAACAGTTCTGAGCTTAGCTCTCGTACGTGATCCTTCACAGTGGGCGTTAxxxxxxATTGTGGCATCAGCGGTAGCATATTATGTGCAAGGTCTGTGCATCCGCGTAAAAGGGCCTGTATTTACCACAGCATTCAGTCCGTTGATGATGATAATCGCGGCAATCATGGGATCTGCTATTCTCTCTGAAAACATCTATTTGGGCAGTGTGCTGGGTGGAGTCGTGATCGCAATAGGGTTGTACGCTGTTCTGTGGGGAAAATTGAAGGATGGCAAGGCCTCAACGGATGAAAATTGTCGGAAGCCCTT

Fln Alignment:

Contig2266___LICFLGTLQATVLSLALVRDPSQWALGxxxxxxxxxxxGIVASAVAYYVQGLCIRVKGPVFTTAFSPLXXXXXXXXXXXXLSENIYLGSVLGGVVIAIGLYAVLWGKLKDGKASTDEN
A9NWT4_________________LICFLGTLQATVLSLAVVRDPSQWALGxxxxxxxxxxxGVVASAIAYYVQGLCMRVKGPVFATAFSPLMMIIVAIMASIILAENIFLGSVLGGVLIVIGLYAVLWGKVKDSKILTDKN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain