SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene2242

Length: 523 nt

UniGene Fasta

>biog3_v1.0_unigene2242
AATGTGGCCATTCTTGTAACCACCCCTGATATAACCAGTCTCCGCGATGCCGATAGGGTGACAGGTCTTTTAGAATGCGATGGCATTAGGGATATCAAGATGGTTGTGAACAGGGTCAGAAGTGATATGATAAAGGGGGAGGATATGATGTCTGTGCTTGATGTGCAAGAGATGCTGGGGCTGGCCTTATTGGGTGTGATTCCTGAGGATGCCGAGGTGATTAGGAGTACTAATAGAGGATACCCACTTGTTCTGAATAGGCCACCTACATTGGCAGGTCTCGCATTCGAACAGGCTGCTTGGAGGCTGGTGGAACAGGATAGCATGAAGGCGGTGTTGGTTGAAGAGACACCGCCTCGGAAGAAAGGGTTCTTGCAATTTTTCGGAGGTTGATGAGCAGGAGACCTTGGGTGGGCTCTTGGCAGATCGTTTCGAACGTTGTATGTTCTTTGGATTCTCGGATTGGCCGTATAGAACAGCAAGATTTGCAGCTACTGATTTTTTTCTAAGGCCTCTATACATT

Ace file of the UniGene biog3_v1.0_unigene2242

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene940	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	Predicted protein n=2 Tax=Physcomitrella patens RepID=E1C9U7_PHYPA	-	-	81%
FL-Next	sp=Putative septum site-determining protein minD homolog, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	88%
Blast2go	septum site-determining protein	-	-	91%

Source	GOs	Term	Type	Identity
Blast2go	barrier septum site selection	GO:0000918	Biological Process	91%
Blast2go	ATP catabolic process	GO:0006200	Biological Process	91%
Blast2go	chloroplast fission	GO:0010020	Biological Process	91%
Blast2go	calcium-dependent ATPase activity	GO:0030899	Molecular Function	91%
Blast2go	protein homodimerization activity	GO:0042803	Molecular Function	91%
Blast2go	chloroplast	GO:0009507	Cellular Component	91%

Source	InterPros	Term	Type	e value	Identity
Sma3	CobQ/CobB/MinD/ParA nucleotide binding domain	IPR002586	-	0.0	-
Sma3	ATP binding protein MinD, bacterial-type	IPR010223	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q9MBA2

Fln msg: your sequence is shorter than subject: 131 - 326

Fln protein: NVAILVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRSDMIKGEDMMSVLDVQEMLGLALLGVIPEDAEVIRSTNRGYPLVLNRPPTLAGLAFEQAAWRLVEQDSMKAVLVEETPPRKKGFLQFFGG*

Protein Length: 132

Fln nts: AATGTGGCCATTCTTGTAACCACCCCTGATATAACCAGTCTCCGCGATGCCGATAGGGTGACAGGTCTTTTAGAATGCGATGGCATTAGGGATATCAAGATGGTTGTGAACAGGGTCAGAAGTGATATGATAAAGGGGGAGGATATGATGTCTGTGCTTGATGTGCAAGAGATGCTGGGGCTGGCCTTATTGGGTGTGATTCCTGAGGATGCCGAGGTGATTAGGAGTACTAATAGAGGATACCCACTTGTTCTGAATAGGCCACCTACATTGGCAGGTCTCGCATTCGAACAGGCTGCTTGGAGGCTGGTGGAACAGGATAGCATGAAGGCGGTGTTGGTTGAAGAGACACCGCCTCGGAAGAAAGGGTTCTTGCAATTTTTCGGAGGTTGA___TGAGCAGGAGACCTTGGGTGGGCTCTTGGCAGATCGTTTCGAACGTTGTATGTTCTTTGGATTCTCGGATTGGCCGTATAGAACAGCAAGATTTGCAGCTACTGATTTTTTTCTAAGGCCTCTATACATT

Fln Alignment:

Contig2242___NVAILVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRSDMIKGEDMMSVLDVQEMLGLALLGVIPEDAEVIRSTNRGYPLVLNRPPTLAGLAFEQAAWRLVEQDSMKAVLVEETPPRK
Q9MBA2_________________NEAVLVTTPDITALRDADRVTGLLECDGIRDIKMIVNRVRTDMIKGEDMMSVLDVQEMLGLSLLGVIPEDSEVIRSTNRGFPLVLNKPPTLAGLAFEQAAWRLVEQDSMKAVMVEEEPKKR

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
460	33		66		0.997452
461		33	66		0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain