SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene2215

Length: 491 nt

UniGene Fasta

>biog3_v1.0_unigene2215
AATGTCTAGAATGCAAAAAACTGGTATGACTCAGAATTGGCTACATTAATGTACCATTATGGTATCAAATATGAAGCAGAAATTGTAAGTGGAAACATTTTCAGTTTGTCGAAATTTCATGGTTCTAAGCTTGGAGATCTCAAGGAAACAATCATGTTAGAAGTCAAGGCTCTCAGAAAGGAAGCCAGGTCATGGCTTGCGGATGGTGAAAGCAGATTGTCAGATCAATATGGAAAAGCATCTGCTTGGTATCATGTAACATATCACCCAGATTATTGGGGTTATGGAGATTATGAAGGGAAAGATGAGAACAACCCTCATTTTATAAGCTTTGCATGGATTGTGTATGACAAGCTACTTCGGATCAAACGTCAGAGTATTGCACAAAAGCTTGCGGGCAATCTTCTAAGCTTGCGTATTTAGGGAGTACATTGATTGTATCACTTCCGCGGTTTTCTTGTGGGTTGAATGCTTTCTATCTTTAGTACATT

Ace file of the UniGene biog3_v1.0_unigene2215

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3292	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	RNA-directed RNA polymerase, putative n=1 Tax=Solanum demissum RepID=Q6L3W8_SOLDE	-	-	56%
FL-Next	sp=Probable RNA-dependent RNA polymerase 1; Oryza sativa subsp. japonica (Rice).	-	-	48%
Blast2go	rna-dependent rna polymerase	-	-	68%

Source	GOs	Term	Type	e value	Identity
Blast2go	transferase activity	GO:0016740	Molecular Function	0.0	68%

Source	InterPros	Term	Type	e value	Identity
Sma3	RNA recognition motif domain	IPR000504	-	0.0	-
Sma3	RNA-dependent RNA polymerase, eukaryotic-type	IPR007855	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q0DXS3

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 141 - 740

Fln protein: NV*NAKNWYDSELATLMYHYGIKYEAEIVSGNIFSLSKFHGSKLGDLKETIMLEVKALRKEARSWLADGESRLSDQYGKASAWYHVTYHPDYWGYGDYEGKDENNPHFISFAWIVYDKLLRIKRQSIAQKLAGNLLSLRI*

Protein Length: 142

Fln nts: AATGTCTAGAATGCAAAAAACTGGTATGACTCAGAATTGGCTACATTAATGTACCATTATGGTATCAAATATGAAGCAGAAATTGTAAGTGGAAACATTTTCAGTTTGTCGAAATTTCATGGTTCTAAGCTTGGAGATCTCAAGGAAACAATCATGTTAGAAGTCAAGGCTCTCAGAAAGGAAGCCAGGTCATGGCTTGCGGATGGTGAAAGCAGATTGTCAGATCAATATGGAAAAGCATCTGCTTGGTATCATGTAACATATCACCCAGATTATTGGGGTTATGGAGATTATGAAGGGAAAGATGAGAACAACCCTCATTTTATAAGCTTTGCATGGATTGTGTATGACAAGCTACTTCGGATCAAACGTCAGAGTATTGCACAAAAGCTTGCGGGCAATCTTCTAAGCTTGCGTATTTAG___GGAGTACATTGATTGTATCACTTCCGCGGTTTTCTTGTGGGTTGAATGCTTTCTATCTTTAGTACATT

Fln Alignment:

Contig2215___KNWYDSELATLMYHYGIKYEAEIVSGNIFSLSKFHGSKLGDLKETIMLEVKALRKEARSWLADGESRLSDQ-------YGKASAWYHVTYHPDYWGYGDYEGKDENNPHFISFAWIVYDKLLRIK-RQSIAQKLAGNLLSL
Q0DXS3_________________KDEYDFKLGNLMDHYGIKSEAEIISGCILKMAK-NFTKKSDA-DAIRLAVRSLRKEARSRFS--EMSLDDNGHGHDASEAKASAWYHVTYHPEFWGCYN-EGYE--RPHFISFPWCIYEKLLRIKQRRKFVRKMQPELFSL

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
215	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain