SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene2209

Length: 1039 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene2209 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene61652	15/15

Source	Descriptions	Term	Type	Identity
AutoFact	Aldehyde dehydrogenase n=1 Tax=Picea sitchensis RepID=A9NUC8_PICSI	-	-	89%
FL-Next	sp=Aldehyde dehydrogenase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	aldehyde dimeric nadp-preferring	-	-	82%

Source	InterPros	Term	Type	Identity
Sma3	Aldehyde dehydrogenase, N-terminal	IPR016162	-	-
Sma3	Aldehyde dehydrogenase NAD(P)-dependent	IPR012394	-	-
Sma3	Aldehyde dehydrogenase domain	IPR015590	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NUC8

Fln msg: Distance to subject end: 27 aas, your sequence is shorter than subject: 346 - 478

Fln protein: GAALIISAWNYPFLLSMDPVIGAIAAGNVVVLKPSEVAPATSSLLASLIPKYLDDDAIRVVEGSVAETTSLLEQKWDKIFYTGSSNIGRIVMAAAAKHLTPVTLELGGKCPVIVDPTVDLEVTARRIVAGKWGSNNGQACIAPDYLITLESFAPKLIDALKNTLEKFYGKDPVQSADLSHIVNLSHFARLTRLLDDPKVSDRVIYGGQRDEKQLMIAPTLVLDVPMDSLIMIEEIFGPLLPIITVQKMEEALEIVGSLSKPLAAYVFTKNKKFERQVVASISAGGMVINDTAIHLTNHHLPFGGVGESGMGAYHGKFSFETFSHKKAVLYRGFMGDLMVRYPPYTT

Protein Length: 347

Fln nts: GGGTGCTGCACTGATCATTTCTGCTTGGAATTATCCATTTTTGTTGTCCATGGATCCAGTTATAGGAGCTATTGCAGCTGGCAATGTAGTGGTTTTGAAACCATCTGAAGTGGCCCCAGCAACATCTTCTTTGCTTGCGAGTCTTATACCAAAATATCTAGATGATGATGCGATTCGTGTTGTTGAGGGGAGTGTTGCAGAGACAACAAGTCTGTTGGAACAAAAATGGGATAAAATATTTTATACAGGTAGTTCAAATATAGGAAGAATTGTGATGGCTGCAGCTGCAAAGCACCTTACTCCTGTAACCTTGGAACTTGGGGGAAAATGTCCAGTCATTGTTGATCCCACAGTGGACTTAGAGGTTACAGCAAGGCGAATTGTAGCTGGCAAGTGGGGAAGTAATAATGGACAAGCATGCATTGCCCCGGATTACCTTATAACACTGGAATCATTTGCTCCTAAATTGATAGATGCTCTAAAAAATACATTGGAGAAATTCTATGGAAAGGATCCAGTTCAGTCGGCAGACTTGTCTCATATTGTCAATTTAAGTCACTTTGCACGTTTAACAAGGCTCTTGGATGATCCAAAGGTGTCAGATAGAGTCATCTATGGGGGTCAGCGAGATGAAAAGCAATTGATGATTGCACCTACTCTCGTGCTGGACGTTCCAATGGATTCCTTGATTATGATAGAGGAAATTTTTGGTCCCCTCCTTCCAATAATCACTGTGCAAAAAATGGAGGAAGCTTTGGAAATTGTGGGTTCTTTGTCCAAGCCACTGGCAGCATATGTGTTTACAAAGAACAAAAAGTTTGAGCGACAAGTGGTGGCAAGCATTTCTGCTGGAGGAATGGTTATCAATGACACTGCTATACATCTTACAAATCATCATTTACCCTTTGGAGGTGTTGGAGAGAGTGGGATGGGAGCATACCATGGAAAGTTCTCATTTGAAACTTTTAGTCATAAAAAGGCAGTACTCTATAGAGGCTTCATGGGAGACCTCATGGTAAGATATCCTCCATACACCACA

Fln Alignment:

Contig2209___GAALIISAWNYPFLLSMDPXXXXXXXXXXXVLKPSEVAPATSSLLASLIPKYLDDDAIRVVEGSVAETTSLLEQKWDKIFYTGSSNIGRIVMAAAAKHLTPVTLELGGKCPVIVDPTVDLEVTARRIVAGKWGSNNGQACIAPDYLITLESFAPKLIDALKNTLEKFYGKDPVQSADLSHIVNLSHFARLTRLLDDPKVSDRVIYGGQRDEKQLMIAPTLVLDVPMDSLIMIEEIFGPLLPIITVQKMEEALEIVGSLSKPLAAYVFTKNKKFERQVVASISAGGMVINDTAIHLTNHHLPFGGVGESGMGAYHGKFSFETFSHKKAVLYRGFMGDLMVRYPPYTT
A9NUC8_________________GAALIISAWNYPLLLSMDPVIGAIAAGNVIVLKPSEVAPATSSLLATLIPQYLDDDAIRVVEGSVAETTSLLEQKWDKIFYTGSGKIGRIVMAAAAKHLTPVTLELGGKCPVIVDPTVDLEVTARRIVAGKWGCNNGQACIAPDYIITPESFAPKLIDALKNTLEKFYGQDPIQSADLSRIVNSSHFVRLTRLLDDPKVSDKVIYGGQRDEKRLIIAPTLVLDAPMDSLIMIEEIFGPLLTIITVQKMEEALEVVSSFSKPLAAYVFTKNKKFERQVVASVSAGGMLVNDTALHVTNHHLPFGGVGESGVGSYHGKFSFEAFSHKKAVLYRGFMGDLMARYPPYTT

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
605	20			80	0.995493
606	80	20			0.995493
609		80		20	0.995493
715	25			75	0.996473
717	25	75			0.996473
718		75		25	0.996473
719		75		25	0.996473
807	33			66	0.997452
811		66		33	0.997452
946	80	20			0.995493
948	80			20	0.995493
949		80		20	0.995493
960	33	66			0.997452
963			66	33	0.997452
964		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain