SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene2196

Length: 328 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene2196
AAGATAGAACGGCTCGCAGATGACAATGACAATGGCAGCGGCCATCATACAGCCGGCCATGGGCTTCGGCTGCAGGTATCGCTTCTTCAATTCCAGAGTAGAACACAATGGTCTCAGGAGTAAACAGAGGTTGTTTTTGGCAAGATGTGGGATAGATTATACGTCTTCTGCAAGAGCTGCGGTCGCATCACAGTTATTTGGAGGGAACAGGGAGCTACGTATAGTGGCAGCAATTGATCCGGAAGTTTCCAGAAGGAGTTTACATCTGGGCAAGGACAAGCAGCGCAGTTTGGATTCTCATTTGGACTTGGATGTTTCTGTCTACATT

Ace file of the UniGene biog3_v1.0_unigene2196 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8344	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[R] COG0457 FOG: TPR repeat	-	-	6.0e-21	30%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	77%
Blast2go	tetratricopeptide repeat-containing protein	-	-	0.0	84%

Source	GOs	Term	Type	Identity
Blast2go	photosystem I assembly	GO:0048564	Biological Process	84%
Blast2go	binding	GO:0005488	Molecular Function	84%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	84%
Blast2go	mitochondrion	GO:0005739	Cellular Component	84%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PQP2

Fln msg: Distance to subject end: 215 aas, your sequence is shorter than subject: 103 - 316

Fln protein: MTMTMAAAIIQPAMGFGCRYRFFNSRVEHNGLRSKQRLFLARCGIDYTSSARAAVASQLFGGNRELRIVAAIDPEVSRRSLHLGKDKQRSLDSHLDLDVSVYI

Protein Length: 104

Fln nts: AAGATAGAACGGCTCGCAG_-_ATGACAATGACAATGGCAGCGGCCATCATACAGCCGGCCATGGGCTTCGGCTGCAGGTATCGCTTCTTCAATTCCAGAGTAGAACACAATGGTCTCAGGAGTAAACAGAGGTTGTTTTTGGCAAGATGTGGGATAGATTATACGTCTTCTGCAAGAGCTGCGGTCGCATCACAGTTATTTGGAGGGAACAGGGAGCTACGTATAGTGGCAGCAATTGATCCGGAAGTTTCCAGAAGGAGTTTACATCTGGGCAAGGACAAGCAGCGCAGTTTGGATTCTCATTTGGACTTGGATGTTTCTGTCTACATT

Fln Alignment:

Contig2196___MTMAAAIIQPAMGFGCRYRFFNSRVEHNGLRSKQRLFLARCGIDYTSSARAAVASQLFGGNRELRIVAAIDPEVSRRSLHLGKDKQRSLDSH
C0PQP2_________________MTMAAAITQPALGFDCRHCFFKSRIEHNGLRSKQRLLFARCGIDYKSSARAAVASELFGGTRAMHIVAAIDLEVSRRNLHPGKDKKHSLESH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain