SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene2191

Length: 1147 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene2191 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16526	31/31

Source	Descriptions	Term	Type	Identity
AutoFact	SGS; HSP20-like chaperone [Medicago truncatula]	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	calcyclin-binding protein	-	-	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	75%

Source	InterPros	Term	Type	Identity
Sma3	CS domain	IPR017447	-	-
Sma3	CS-like domain	IPR007052	-	-
Sma3	SGS	IPR007699	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NKD7

Fln msg:

Fln protein: MASDLNADIEELSHLLTIAKRPRIRALLTDELQQSQKAQVTAESKGPVKVAAPLQTSAAKRPETSYTTLGSFSWDQDNEKIKVYLFLEGVNEEKVVSNFQPWSFDVKLHDIEGKNYRCGVPKLNKAIVPEKCRLTVKPQRVIITLQKAEKGNWLDIYYKEDKLKSNLDKNKDPMAGIMDLMKNMYEEGDDDMKKTIAKAWSEARTGKKPDPLKGYGGDM*

Protein Length: 221

Fln nts: AATGTCTTCGGTTACATTATATTATCTGCAGGCGGTATTCTCGTTCTGTTACAAAACCCTGACGTCCTCGACCTTAAACTTGTTCCTAAAGTCCGTGCCCTGAAGTTATC_-_ATGGCGAGCGATTTGAACGCAGACATTGAGGAGCTTTCTCATTTGCTAACCATTGCAAAAAGGCCTAGAATTCGGGCCCTGCTCACTGACGAGCTTCAGCAGTCGCAGAAGGCCCAAGTGACTGCAGAGTCAAAAGGTCCAGTAAAGGTAGCAGCACCTTTACAAACCTCTGCTGCGAAAAGACCGGAAACATCCTACACAACACTCGGATCATTCAGCTGGGATCAGGATAATGAAAAAATCAAGGTATATCTATTTCTCGAGGGAGTAAATGAAGAGAAAGTTGTTTCTAATTTCCAGCCTTGGTCATTTGATGTCAAACTTCACGATATCGAAGGAAAAAATTATCGCTGTGGTGTGCCAAAGCTGAACAAGGCTATAGTGCCAGAAAAATGTAGACTCACTGTTAAGCCTCAACGTGTTATTATTACCCTTCAGAAGGCTGAGAAGGGTAATTGGCTAGATATTTATTACAAGGAGGATAAGTTGAAGTCAAACCTTGACAAGAACAAAGATCCAATGGCAGGAATCATGGATCTGATGAAGAATATGTATGAAGAGGGTGATGATGATATGAAGAAAACTATTGCCAAAGCTTGGAGTGAAGCACGAACAGGGAAGAAACCAGATCCATTAAAAGGATACGGTGGTGACATGTAG___AAAGAGCAGATTGAAATTTAGAGCTCTATATATGCCTATTCAGCAGCAGAGGCAGCTAGAATTGTGAGATGAATACTTTGTAGTATAAGGTATTTACTGTGCCACAGTGTTTGACCTAGGCCAGTTCACAATCCTGATGAGTTTCAAGTTGGTTATTACGTCAGATCTGCTGAGGTTGCCAAAACTGGGAAAAAATTAAGACCTGTATTGCTCTTTGATTAGGCCGTCGGTTTCTTAGTATATATGCAAATGTCTTTTGCACAATCTCACATATGCAAGTAGGCTACGTTGCAGTTCCGGAGGTTTATACTTAACTATGCAAACAGTGTATTGTTACGTATGATAAATTCATTTGATTTTGCTTATCAGCACGTTGA

Fln Alignment:

Contig2191___MASDLNADIEELSHLLTIAKRPRIRALLTDELQQSQKAQVTAESKGPVKVAAPLQTSAAKRPETSYTTLGSFSWDQDNEKIKVYLFLEGVNEEKVVSNFQPWSFDVKLHDIEGKNYRCGVPKLNKAIVPEKCRLTVKPQRVIITLQKAEKGNWLDIYYXXXXXXXXXXXXXDPMAGIMDLMKNMYEEGDDDMKKTIAKAWSEARTGKKPDPLKGYGGDM
A9NKD7_________________MASDLNADMEELSHLLTIAKRPRIRALLTDELQQSQKAQVIAESKGPVKVA-PLQTSAAKRPETSYTTLGSFSWDQDNEKIKVYLFLEGVNQEKVISDFQPWSFDVKLHDIQGKNYRCGVPKLNKAIVPEKCRLTVKPQRVIITLQKAEKGNWQDIYYKDDKLKSNLDNSKDPMAGIMDLMKNMYEEGDDDMKKTIAKAWSEARSGKKPDPLKGYGGDV

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
247	25			75	0.996473
354	20		80		0.995493
356	20			80	0.995493
357		80		20	0.995493
735	88			11	0.923564
736			88	11	0.923564
737	12		87		0.992554
740			85	14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain