SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene2174

Length: 847 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene2174

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene12636	16/16

Source	Descriptions	Term	Type	Identity
AutoFact	Cysteine protease, putative n=1 Tax=Ricinus communis RepID=B9RHA4_RICCO	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Blast2go	cysteine protease	-	-	79%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Cysteine endopeptidases.	EC:3.4.22.-	-	0.0	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	proteolysis	GO:0006508	Biological Process	0.0	79%
Blast2go	cysteine-type endopeptidase activity	GO:0004197	Molecular Function	0.0	79%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Peptidase C1A, papain	IPR013128	-	-
Sma3	Peptidase C1A, papain C-terminal	IPR000668	-	-
Sma3	Proteinase inhibitor I29, cathepsin propeptide	IPR013201	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NU42

Fln msg: Distance to subject end: 107 aas, atg_distance in limit (1-15): atg_distance = 6, your sequence is shorter than subject: 279 - 394

Fln protein: MDRVEMITGMLSLALLFIVPGITAHIQGASSDINGVLLNPIREVTDMDGEGIIDDLRRGLLNAEAHFAHFLKKFNKKYSGVEEHAYRFSIFKKNLRKALRHQKLDRDAIHGINKFSDLTEEEFHQRYLGLARTPLSLSQRTQPAPILPTDDLPSNFDWRELGAVTGVKNQGGCGSCWTFSTTGAMEGANYMKTGKLVSLSEQQLVDCDHECDSSEPDECDSGCNGGLMTTAYQYALKAGGLQREEDYPYTGTEGSCKFDKTKVAAMVANFSTVSIDEDI

Protein Length: 280

Fln nts: ACAGGAAACA_-_ATGGATAGAGTTGAGATGATAACAGGGATGCTTTCCCTTGCCCTCTTATTCATAGTTCCGGGGATTACAGCCCACATCCAGGGGGCATCTTCTGATATAAATGGTGTTCTTCTGAATCCCATCCGTGAAGTGACCGACATGGATGGCGAGGGAATAATAGACGATCTGAGGCGAGGGCTGTTGAATGCAGAGGCCCATTTTGCTCATTTTCTGAAGAAATTCAATAAGAAATACTCTGGAGTGGAGGAACACGCCTATCGTTTCTCCATCTTCAAGAAGAATCTGCGCAAGGCTCTCAGGCACCAGAAGTTGGACCGTGACGCTATTCATGGCATCAACAAGTTTTCAGATCTGACAGAGGAGGAGTTCCATCAGCGGTACCTGGGTCTGGCTAGGACTCCACTCTCGCTCTCACAACGAACTCAACCCGCCCCAATACTGCCTACTGACGATTTACCCTCTAACTTTGACTGGAGAGAGCTTGGCGCTGTCACTGGTGTCAAGAATCAGGGCGGTTGTGGGTCTTGTTGGACTTTCAGCACGACTGGAGCAATGGAAGGAGCAAATTACATGAAAACAGGAAAGCTTGTGAGTCTAAGCGAGCAACAACTTGTGGATTGCGATCATGAGTGCGACTCTTCAGAGCCAGATGAGTGTGACTCGGGATGCAACGGTGGCCTAATGACAACTGCGTACCAGTATGCTCTCAAAGCTGGTGGATTGCAAAGGGAGGAAGATTATCCATACACAGGAACTGAGGGGTCCTGTAAGTTTGACAAGACCAAAGTTGCAGCCATGGTTGCCAACTTCAGCACAGTGTCAATCGATGAAGACATT

Fln Alignment:

Contig2174___QETMDRVEMITGMLSLALLFIVPGITAHIQGASSDINGVLLNPIREVTDMDGEGIIDDLRRGLLNAEAHFAHFLKKFNKKYSGVEEHAYRFSIFKKNLRKALRHQKLDRDAIHGINKFSDLTEEEFHQRYLGLARTPLSLSQRTQPAPILPTDDLPSNFDWRELGAVTGVKNQGGCGSCWTFSTTGAMEGANYMKTGKLVSLSEQQLVDCDHECDSSEPDECDSGCNGGLMTTAYQYALKAGGLQREEDYPYTGTEGSCKFDKTKVAAMVANFSTVSIDED
A9NU42_________________KERMSSVEMITGILSLALLFLVPTITAHVHEASSDLNAVLPNPIREVTDMDGEGVIDDLRRGLLNAEAHFAHFVKKFNKEYSGAEEHARRFSIFKKNLHKALRHQKLDRDAIHGINKFSDLTEEEFHEQYLGLTTPPRSLSQRTQPAPILPTDDLPPDFDWRELGAVTPVKNQGACGSCWTFSTTGAMEGANFMKTGKLISLSEQQLVDCDHECDSSEPDVCDSGCNGGLMTTAYQYALKAGGLQREEDYPYTGIDGSCKFDNTKVAAMVANFSTVSIDED

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
262	25	75			0.996473
263	25		75		0.996473
264		75		25	0.996473
265		75	25		0.996473
354	20			80	0.995493
355	20			80	0.995493
357	16	66	16		0.988813
358	83			16	0.994512
672		90		10	0.90298
701	22		77		0.999999
703	22		77		0.999999
705	77			22	0.999999
717	14			85	0.993533
720	85			14	0.993533
721	85			14	0.993533
743		16	66		0.988813
745	83			16	0.994512
746		16	66	16	0.988813
759		75		25	0.996473
760	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain