SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene2172

Length: 3279 nt

UniGene Fasta

>biog3_v1.0_unigene2172
GTCCCCAAGCCTGGGCGATTAGTGGGGTTTTCCGTGTGGTTGTTGTGTGTTGTGCTTATCCATGAGCCAATATGCATATAATCGGCGCCACTGCTCTCCTTAGAGCGACTCGAACCTCGTTCCACCCCTCCATAGCTCGAGCTGTTTCGACATCCAATTTTTCTTCGGCATCTTCCCCGTTTTCTCCTCGATCTCAGTCAGTTGCAGCCCTCAGAGGGTTTCCAACTGGTTCCCAGGCCGTAAAATCTTTAAATACCTCGTCTTTCGCAGGAGATCAGTCGCGGTTTCGGAGCTTGCTAGGGTTTCACCGCTGGAATTTAAATCACGGGCTCAGAGCGCACGCGAGATCATCCGCTGCCGTTCTCAGCCCTGTCGAACGGAAAATGTCCACCATGGCGACTGAGAATGCTTTCAAGCATATTTTGACTGGCCTTCCTAAACCTGGTGGAGGAGAGTTTGGAAAGTATTACAGCCTTACAGCTCTCAATGATCCAAGGACAGATAGACTGCCTTATTCTGTCAGAATTCTTCTCGAGTCAGCAATTCGCAACTGTGATAATTTTCAAGTAACGAAGAATGATGTGGAGAAGATTCTTGATTGGGAGAATACTTCCCCAAAACAAGTTGAAATTCCTTTTAAACCTGCTCGTGTTATTCTGCAGGATTTCACTGGTGTGCCAGCAGTTGTTGATCTCGCTAGCATGCGTGATGGTATTAAAAGTCTCGGTGGTGATCCTAATAAGATCAATCCTTTGGTACCCGTGGACCTTGTTGTTGATCATTCAGTACAAGTAGATGTAGCTAGATCTGAAAATGCATTGCTTGCAAACATGGAGTTTGAATTTAATCGTAACACAGAAAGGTTTGCTTTCCTCAAGTGGGGCTCAACTGCTTTTGAGAACATGCTCGTTGTTCCTCCGGGTTCTGGTATTGTACACCAGGTGAATTTGGAATATCTGGGAAGGGTGGTATTTAATACCAATGGTCTACTTTATCCGGATAGTGTTGTTGGAACTGATTCCCACACAACTATGATAGATGGATTAGGTGTTGCTGGCTGGGGAGTTGGAGGAATCGAAGCAGAAGCTGCTATGCTTGGCCAGCCAATGAGTATGGTTCTTCCTGGTGTTGTTGGTTTCAAATTAACTGGCACTTTGAACAATGGAGTGACAGCTACGGACTTGGTTCTAACGGTGACTCAAATTTTACGAAAGCATGGTGTGGTTGGTAAATTTGTTGAGTTCTATGGTGATGGCATGGGTGAATTATCACTTGCCGATCGAGCAACTATTGCAAACATGTCTCCAGAGTATGGGGCAACCATGGGATTTTTCCCTGTAGATCATGTTACTCTGCAGTATTTGAGGTTAACAGGTCGCAGTGATGAGACTGTGAAGATGATTGAGGCTTACCTCCGTGCCAACAAAATGTTTGTGGACTATAATGAGCCACAAATAGAGAGGTCTTATTCGTCCTACTTGGAATTGGATCTTTCATCTGTTGAACCTTGTATATCAGGACCAAAACGACCTCATGATCGGGTTACTCTCAAGGAAATGAAATCTGATTGGCATGCTTGCCTAGACAACAAGGTTGGGTTTAAGGGTTTTGCCATTCCGAAAGAGAAACAAGAAAAAGTTGTGAAGTTTACATACAATGGTACACCTGCTGAACTAAGACATGGTGATGTTGTTATAGCGGCTATCACCAGTTGCACGAACACATCAAATCCTAATGTCATGCTTGGGGCTGGCCTTGTTGCAAAGAAAGCTTGTGAATTAGGTCTGGAGGTCAAGCCATGGATTAAGACCAGTCTTGCCCCAGGATCTGGAGTTGTTACTAAATACTTGAAGCGGAGCGGCCTGGATAAGTACTTAGATCAACAAGGCTTTCAACTTGTTGGGTATGGATGTACTACATGTATTGGAAACTCAGGAGATCTTCATGAATCTGTGAGCTCTGCTATTGCTGAAAATGATTTAGTTGCGTCAGCTGTGCTGTCTGGCAACAGAAATTTTGAAGGCCGTGTTCATCCTCTGACTCGGGCAAACTACCTTGCTTCTCCTCCACTTGTAGTTGCATATGCTCTTGCTGGCACTGTTGACATTGATTTCGAGACGGAGCCTATTGGTACTGGAAAGGATGGGAAGAAAGTTTACTTCAGAGATGTCTGGCCTTCAACTGAAGAAATAGCAGAGGTTGTACAATCTGCTGTCCTACCAGACATGTTTAAGCAAACATATGAAGCAATAACAAAGGGCAATCCTATGTGGAACCAGCTTCCTGTTCCAACCGGCACTTTGTATACGTGGGATCCAAAATCCACTTACATACATGATCCTCCATATTTTAAAGATATGACAATGACTCCTCCTGGTCCACATGGCGTGAAGGATGCATACTGTTTGCTTAACTTGGGGGACAGCATAACAACAGATCACATTTCTCCTGCAGGCAACATCCAGAAAGATAGTCCAGCAGCAAAGTATCTTATGGAACGTGGAGTTGATAGAAAAGACTTCAATTCCTATGGAAGTCGTCGAGGAAATGACGAAATCATGGCTAGAGGAACATTTGCAAATATCCGCTTGGTGAATAAGCTCTTGAATGGTGAAGTTGGGCCAAAAACCATACATATCCCCACTGGAGAGAAGTTATCTGTGTATGATGCAGCTATGAGGTACAAAAGTGCAGGGCATGATACAATTGTTCTTGCTGGAGCTGAATATGGTAGTGGAAGTTCTCGGGATTGGGCTGCAAAGGGTCCAATGTTGCAGGGTGTGAAAGCTGTTATCTCAAAAAGTTTTGAGCGTATTCATCGCAGCAATTTGGTTGGCATGGGTATTATTCCATTGTGTTTCAAATCTGGTGAGGACGCTGAGTCGCTTGGCCTGACAGGGCATGAGAGATACACAATAGATATTCCTAATGATATCACTCAACTGAAGCCGGGTCAAGACATTACTGTTACAACAGACACTGGAAAATCATTCACTTGTGTTGCAAGGTTTGATACACAGGTTGAATTGGAATACTTCAACCATGCAGGCATTCTTCCTTACGTTATGAGGCAGCTGGTTGGCAATCAAAAGTAGAGTAGCTGTGTCATTGAATTATGCAGGAATCCTGGTGGATAGAATGATTTTTTTGTCCACAGTTTTATAAATAGTTTTGACTTGAAATAATGTGCATTGGTTTATGCACAGTGGGTAAACCCCGAGGGGACATTTTTGATGAGGCTATGCCGCCAATAGAATTCATGTCAGTATTTGCAGTTTT

Ace file of the UniGene biog3_v1.0_unigene2172

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15693	272/276
SustainPine v2.0	sp_v2.0_unigene76810	1/276
SustainPine v2.0	sp_v2.0_unigene79112	1/276

Source	Descriptions	Term	Type	Identity
AutoFact	Aconitase, putative n=9 Tax=Spermatophyta RepID=B9SDW5_RICCO	-	-	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	aconitate hydratase	-	-	91%

Source	ECs	Term	Type	e value	Identity
Blast2go	Aconitate hydratase.	EC:4.2.1.3	-	0.0	91%

Source	KEGGs	Term	Identity
Blast2go	Citrate cycle (TCA cycle)	00020	91%
Blast2go	Glyoxylate and dicarboxylate metabolism	00630	91%
Blast2go	Carbon fixation pathways in prokaryotes	00720	91%
Blast2go	Biosynthesis of phenylpropanoids	01061	91%
Blast2go	Biosynthesis of terpenoids and steroids	01062	91%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	91%
Blast2go	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	91%
Blast2go	Biosynthesis of alkaloids derived from histidine and purine	01065	91%
Blast2go	Biosynthesis of alkaloids derived from terpenoid and polyketide	01066	91%
Blast2go	Biosynthesis of plant hormones	01070	91%
Blast2go	Metabolic pathways	01100	91%
Blast2go	Biosynthesis of secondary metabolites	01110	91%

Source	GOs	Term	Type	Identity
Blast2go	response to oxidative stress	GO:0006979	Biological Process	91%
Blast2go	response to salt stress	GO:0009651	Biological Process	91%
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	91%
Blast2go	isocitrate metabolic process	GO:0006102	Biological Process	91%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	91%
Blast2go	citrate metabolic process	GO:0006101	Biological Process	91%
Blast2go	copper ion binding	GO:0005507	Molecular Function	91%
Blast2go	ATP binding	GO:0005524	Molecular Function	91%
Blast2go	aconitate hydratase activity	GO:0003994	Molecular Function	91%
Blast2go	cell wall	GO:0005618	Cellular Component	91%
Blast2go	mitochondrion	GO:0005739	Cellular Component	91%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	91%
Blast2go	chloroplast	GO:0009507	Cellular Component	91%

Source	InterPros	Term	Type	Identity
Sma3	Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3	IPR015931	-	-
Sma3	Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha	IPR001030	-	-
Sma3	Aconitase/isopropylmalate dehydratase	IPR015937	-	-
Sma3	Aconitase/3-isopropylmalate dehydratase, swivel	IPR015928	-	-
Sma3	Aconitase/iron regulatory protein 2	IPR006249	-	-
Sma3	Aconitase/Iron regulatory protein 2/2-methylisocitrate dehydratase	IPR015934	-	-
Sma3	Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2	IPR015932	-	-
Sma3	Aconitase family, 4Fe-4S cluster binding site	IPR018136	-	-
Sma3	Aconitase A/isopropylmalate dehydratase small subunit, swivel	IPR000573	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NX49

Fln msg: your sequence is longer than subject: 1008 - 565

Fln protein: MHIIGATALLRATRTSFHPSIARAVSTSNFSSASSPFSPRSQSVAALRGFPTGSQAVKSLNTSSFAGDQSRFRSLLGFHRWNLNHGLRAHARSSAAVLSPVERKMSTMATENAFKHILTGLPKPGGGEFGKYYSLTALNDPRTDRLPYSVRILLESAIRNCDNFQVTKNDVEKILDWENTSPKQVEIPFKPARVILQDFTGVPAVVDLASMRDGIKSLGGDPNKINPLVPVDLVVDHSVQVDVARSENALLANMEFEFNRNTERFAFLKWGSTAFENMLVVPPGSGIVHQVNLEYLGRVVFNTNGLLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLTGTLNNGVTATDLVLTVTQILRKHGVVGKFVEFYGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYLRLTGRSDETVKMIEAYLRANKMFVDYNEPQIERSYSSYLELDLSSVEPCISGPKRPHDRVTLKEMKSDWHACLDNKVGFKGFAIPKEKQEKVVKFTYNGTPAELRHGDVVIAAITSCTNTSNPNVMLGAGLVAKKACELGLEVKPWIKTSLAPGSGVVTKYLKRSGLDKYLDQQGFQLVGYGCTTCIGNSGDLHESVSSAIAENDLVASAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFETEPIGTGKDGKKVYFRDVWPSTEEIAEVVQSAVLPDMFKQTYEAITKGNPMWNQLPVPTGTLYTWDPKSTYIHDPPYFKDMTMTPPGPHGVKDAYCLLNLGDSITTDHISPAGNIQKDSPAAKYLMERGVDRKDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPTGEKLSVYDAAMRYKSAGHDTIVLAGAEYGSGSSRDWAAKGPMLQGVKAVISKSFERIHRSNLVGMGIIPLCFKSGEDAESLGLTGHERYTIDIPNDITQLKPGQDITVTTDTGKSFTCVARFDTQVELEYFNHAGILPYVMRQLVGNQK*

Protein Length: 1009

Fln nts: GTCCCCAAGCCTGGGCGATTAGTGGGGTTTTCCGTGTGGTTGTTGTGTGTTGTGCTTATCCATGAGCCAAT_-_ATGCATATAATCGGCGCCACTGCTCTCCTTAGAGCGACTCGAACCTCGTTCCACCCCTCCATAGCTCGAGCTGTTTCGACATCCAATTTTTCTTCGGCATCTTCCCCGTTTTCTCCTCGATCTCAGTCAGTTGCAGCCCTCAGAGGGTTTCCAACTGGTTCCCAGGCCGTAAAATCTTTAAATACCTCGTCTTTCGCAGGAGATCAGTCGCGGTTTCGGAGCTTGCTAGGGTTTCACCGCTGGAATTTAAATCACGGGCTCAGAGCGCACGCGAGATCATCCGCTGCCGTTCTCAGCCCTGTCGAACGGAAAATGTCCACCATGGCGACTGAGAATGCTTTCAAGCATATTTTGACTGGCCTTCCTAAACCTGGTGGAGGAGAGTTTGGAAAGTATTACAGCCTTACAGCTCTCAATGATCCAAGGACAGATAGACTGCCTTATTCTGTCAGAATTCTTCTCGAGTCAGCAATTCGCAACTGTGATAATTTTCAAGTAACGAAGAATGATGTGGAGAAGATTCTTGATTGGGAGAATACTTCCCCAAAACAAGTTGAAATTCCTTTTAAACCTGCTCGTGTTATTCTGCAGGATTTCACTGGTGTGCCAGCAGTTGTTGATCTCGCTAGCATGCGTGATGGTATTAAAAGTCTCGGTGGTGATCCTAATAAGATCAATCCTTTGGTACCCGTGGACCTTGTTGTTGATCATTCAGTACAAGTAGATGTAGCTAGATCTGAAAATGCATTGCTTGCAAACATGGAGTTTGAATTTAATCGTAACACAGAAAGGTTTGCTTTCCTCAAGTGGGGCTCAACTGCTTTTGAGAACATGCTCGTTGTTCCTCCGGGTTCTGGTATTGTACACCAGGTGAATTTGGAATATCTGGGAAGGGTGGTATTTAATACCAATGGTCTACTTTATCCGGATAGTGTTGTTGGAACTGATTCCCACACAACTATGATAGATGGATTAGGTGTTGCTGGCTGGGGAGTTGGAGGAATCGAAGCAGAAGCTGCTATGCTTGGCCAGCCAATGAGTATGGTTCTTCCTGGTGTTGTTGGTTTCAAATTAACTGGCACTTTGAACAATGGAGTGACAGCTACGGACTTGGTTCTAACGGTGACTCAAATTTTACGAAAGCATGGTGTGGTTGGTAAATTTGTTGAGTTCTATGGTGATGGCATGGGTGAATTATCACTTGCCGATCGAGCAACTATTGCAAACATGTCTCCAGAGTATGGGGCAACCATGGGATTTTTCCCTGTAGATCATGTTACTCTGCAGTATTTGAGGTTAACAGGTCGCAGTGATGAGACTGTGAAGATGATTGAGGCTTACCTCCGTGCCAACAAAATGTTTGTGGACTATAATGAGCCACAAATAGAGAGGTCTTATTCGTCCTACTTGGAATTGGATCTTTCATCTGTTGAACCTTGTATATCAGGACCAAAACGACCTCATGATCGGGTTACTCTCAAGGAAATGAAATCTGATTGGCATGCTTGCCTAGACAACAAGGTTGGGTTTAAGGGTTTTGCCATTCCGAAAGAGAAACAAGAAAAAGTTGTGAAGTTTACATACAATGGTACACCTGCTGAACTAAGACATGGTGATGTTGTTATAGCGGCTATCACCAGTTGCACGAACACATCAAATCCTAATGTCATGCTTGGGGCTGGCCTTGTTGCAAAGAAAGCTTGTGAATTAGGTCTGGAGGTCAAGCCATGGATTAAGACCAGTCTTGCCCCAGGATCTGGAGTTGTTACTAAATACTTGAAGCGGAGCGGCCTGGATAAGTACTTAGATCAACAAGGCTTTCAACTTGTTGGGTATGGATGTACTACATGTATTGGAAACTCAGGAGATCTTCATGAATCTGTGAGCTCTGCTATTGCTGAAAATGATTTAGTTGCGTCAGCTGTGCTGTCTGGCAACAGAAATTTTGAAGGCCGTGTTCATCCTCTGACTCGGGCAAACTACCTTGCTTCTCCTCCACTTGTAGTTGCATATGCTCTTGCTGGCACTGTTGACATTGATTTCGAGACGGAGCCTATTGGTACTGGAAAGGATGGGAAGAAAGTTTACTTCAGAGATGTCTGGCCTTCAACTGAAGAAATAGCAGAGGTTGTACAATCTGCTGTCCTACCAGACATGTTTAAGCAAACATATGAAGCAATAACAAAGGGCAATCCTATGTGGAACCAGCTTCCTGTTCCAACCGGCACTTTGTATACGTGGGATCCAAAATCCACTTACATACATGATCCTCCATATTTTAAAGATATGACAATGACTCCTCCTGGTCCACATGGCGTGAAGGATGCATACTGTTTGCTTAACTTGGGGGACAGCATAACAACAGATCACATTTCTCCTGCAGGCAACATCCAGAAAGATAGTCCAGCAGCAAAGTATCTTATGGAACGTGGAGTTGATAGAAAAGACTTCAATTCCTATGGAAGTCGTCGAGGAAATGACGAAATCATGGCTAGAGGAACATTTGCAAATATCCGCTTGGTGAATAAGCTCTTGAATGGTGAAGTTGGGCCAAAAACCATACATATCCCCACTGGAGAGAAGTTATCTGTGTATGATGCAGCTATGAGGTACAAAAGTGCAGGGCATGATACAATTGTTCTTGCTGGAGCTGAATATGGTAGTGGAAGTTCTCGGGATTGGGCTGCAAAGGGTCCAATGTTGCAGGGTGTGAAAGCTGTTATCTCAAAAAGTTTTGAGCGTATTCATCGCAGCAATTTGGTTGGCATGGGTATTATTCCATTGTGTTTCAAATCTGGTGAGGACGCTGAGTCGCTTGGCCTGACAGGGCATGAGAGATACACAATAGATATTCCTAATGATATCACTCAACTGAAGCCGGGTCAAGACATTACTGTTACAACAGACACTGGAAAATCATTCACTTGTGTTGCAAGGTTTGATACACAGGTTGAATTGGAATACTTCAACCATGCAGGCATTCTTCCTTACGTTATGAGGCAGCTGGTTGGCAATCAAAAGTAG___AGTAGCTGTGTCATTGAATTATGCAGGAATCCTGGTGGATAGAATGATTTTTTTGTCCACAGTTTTATAAATAGTTTTGACTTGAAATAATGTGCATTGGTTTATGCACAGTGGGTAAACCCCGAGGGGACATTTTTGATGAGGCTATGCCGCCAATAGAATTCATGTCAGTATTTGCAGTTTT

Fln Alignment:

Contig2172___MIEAYLRANKMFVDYNEPQIERXXXXXXXXXXXXVEPCISGPKRPHDRVTLKEMKSDWHACLDNKVGFKGFAIPKEKQEKVVKFTYNGTPAELRHGDVVIAAITSCTNTSNPNVMLGAGLVAKKACELGLEVKPWIKTSLAPGSGVVTKYLKRSGLDKYLDQQGFQLVGYGCTTCIGNSGDLHESVSSAIAENDLVASAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFETEPIGTGKDGKKVYFRDVWPSTEEIAEVVQSAVLPDMFKQTYEAITKGNPMWNQLPVPTGTLYTWDPKSTYIHDPPYFKDMTMTPPGPHGVKDAYCLLNLGDSITTDHISPAGNIQKDSPAAKYLMERGVDRKDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPTGEKLSVYDAAMRYKSAGHDTIVLAGAEYGSGSSRDWAAKGPMLQGVKAVISKSFERIHRSNLVGMGIIPLCFKSGEDAESLGLTGHERYTIDIPNDITQLKPGQDITVTTDTGKSFTCVARFDTQVELEYFNHAGILPYVMRQLVGNQK
A9NX49_________________MIESYLRANKMFVDYNEPQIERTYSSYLELDLSSVEPCISGPKRPHDRVTLKEMKADWHSCLDNKVGFKGFAIPKEKQEKVVKFTYNGTPAELRHGDVVIAAITSCTNTSNPNVMLGAGLVAKKACELGLEVKPWVKTSLAPGSGVVTKYLKKSGLDKYLDQQGFQLVGYGCTTCIGNSGDLHESVSSAITENDLVASAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFETEPIGTGKDGKKVYFRDIWPSTEEIAEVVHSAVLPDMFRQTYEAITKGNPMWNQLPVPTGTLYTWDPTSTYIHDPPYFKDMTMTPPGPHGVKDAYCLLNLGDSITTDHISPAGNIQKDSPAAKYLMERGVDRKDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPTGEKLSVYDAAIRYKSAGQDTIVLAGAEYGSGSSRDWAAKGPMLQGVKAVISKSFERIHRSNLVGMGIIPLCFKSGEDAESLGLTGHERYSIDLPNDIAQLKPGQDITVTTDTGKSFTCVARFDTQVELEYFNHGGILPYVIRQLISNQK

SNPs (tot: 37)

Position	A %	C %	G %	T %	Probability
108		33	66		1.0
1116		11		88	0.999937
1119			88	11	0.999937
1301	83			16	0.999991
1318			88	11	0.923564
1378		11	88		0.923564
1379	11		88		0.923564
1381		88		11	0.923564
1394	12	87			0.992554
1528	88			11	0.923564
1529	88			11	0.923564
1550	11	88			0.923564
1552		88	11		0.923564
1557			80	20	0.999996
1561	90			10	0.90298
1596		11	88		0.923564
1597	11		88		0.923564
1602	12		75		0.975346
1604	22		11	66	0.999999
1606			11	88	0.923564
1607	85			14	0.993533
1640	87			12	0.992554
1641	87		12		0.992554
1642	87			12	0.992554
1679		90		10	0.90298
2249		10	90		0.90298
2251	90			10	0.90298
2252			90	10	0.90298
2669		10		90	0.90298
2676		90		10	0.90298
2701	10		90		0.90298
2705			90	10	0.90298
3034	10		90		0.999898
3035		10	90		0.999898
3037	90			10	0.999898
3186	80	20			0.995493
3189	80			20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain