SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene2171

Length: 864 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene2171

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6734	15/15

Source	Descriptions	Term	Type	Identity
AutoFact	AT-hook DNA-binding protein [Gossypium hirsutum]	-	-	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	dna binding	-	-	76%

Source	GOs	Term	Type	e value	Identity
Blast2go	DNA binding	GO:0003677	Molecular Function	0.0	76%

Source	InterPros	Term	Type	Identity
Sma3	Transcription factor TFIIB	IPR000812	-	-
Sma3	Carbohydrate/puine kinase, PfkB, conserved site	IPR002173	-	-
Sma3	Domain of unknown function DUF296	IPR005175	-	-
Sma3	Microtubule-associated protein, MAP65/ASE1-type	IPR007145	-	-
Sma3	Predicted AT-hook DNA-binding	IPR014476	-	-
Sma3	AT hook, DNA-binding motif	IPR017956	-	-
Sma3	Peptidase S26A, signal peptidase I, serine active site	IPR019756	-	-

Full-Lengther Next Prediction

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
155	33		66		0.997452
159			66	33	0.997452
185	11			88	0.923564
186	11			88	0.923564
187		88		11	0.923564
189		88		11	0.923564
200	11			88	0.923564
346	11		88		0.923564
347	11		88		0.923564
348			88	11	0.923564
349		88	11		0.923564
350	87			12	0.992554
373	12		87		0.992554
375	87		12		0.992554
384	11		88		0.923564
387			88	11	0.923564
472		20		80	0.995493
473	20			80	0.995493
558	25		75		0.996473
559		25	75		0.996473
562		75		25	0.996473
746	33		66		0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain