SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene2121

Length: 999 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene2121

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2132	26/26

Source	Descriptions	Term	Type	Identity
AutoFact	Diacylglycerol kinase, alpha, putative n=1 Tax=Ricinus communis RepID=B9RW81_RICCO	-	-	70%
FL-Next	sp=Diacylglycerol kinase 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	28%
Blast2go	diacylglycerol kinase 5	-	-	79%

Source	ECs	Term	Type	e value	Identity
Blast2go	Diacylglycerol kinase.	EC:2.7.1.107	-	0.0	79%

Source	KEGGs	Term	Identity
Blast2go	Glycerolipid metabolism	00561	79%
Blast2go	Glycerophospholipid metabolism	00564	79%
Blast2go	Metabolic pathways	01100	79%
Blast2go	Phosphatidylinositol signaling system	04070	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway	GO:0007205	Biological Process	0.0	79%
Blast2go	diacylglycerol kinase activity	GO:0004143	Molecular Function	0.0	79%

Source	InterPros	Term	Type	Identity
Sma3	Diacylglycerol kinase, accessory domain	IPR000756	-	-
Sma3	Diacylglycerol kinase, catalytic domain	IPR001206	-	-
Sma3	Diacylglycerol kinase, plant	IPR016961	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q39017

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 171 aas, your sequence is shorter than subject: 332 - 728

Fln protein: RAKSIENRPRHFEIDTVVSSFQFQVGVDGL*I*KKQSD*DLKSGSWRFII*KFHRLNEFQVRFAVHYRNFKVLWPKAKQHYQTNQHSKMSVQAELISEMRIPDCYLRSDIERVVNISKAPTCPVIVFINSRSGGQLGARLLHTYRNLLNHLQIFDLDEEAPDQVLSKLLGHLERLKADGLRFAAEIRENMRIIVAGGDGTAGWLLGVVSDLKLSNPPPIATVPLGTGNNLPFSFGWGKKNPGTDHESVKRFLEKVKKAKIMQIDSWHIRMRMRIPAEGPLDPVAPLELPHSLHAFKRLSQSDVLNEEGYHTFRGGFWNYFSLGIDAQVSYEF

Protein Length: 333

Fln nts: GCGGGCCAAATCGATAGAAAACCGGCCGAGGCATTTCGAAATTGACACGGTTGTTTCTTCATTTCAGTTCCAAGTAGGAGTCGATGGTCTATAAATTTGAAAGAAACAATCGGATTAAGATTTGAAATCTGGATCGTGGCGATTTATCATCTGAAAATTTCACAGATTAAACGAATTTCAGGTCAGATTTGCCGTGCATTACAGGAATTTTAAGGTGCTCTGGCCAAAGGCAAAACAGCACTATCAAACAAATCAACACTCTAAAATGTCTGTTCAGGCTGAACTAATCAGTGAAATGCGTATTCCAGATTGTTATTTGAGAAGTGATATCGAGCGAGTGGTCAATATAAGCAAGGCACCAACATGTCCTGTGATAGTGTTCATCAACTCTAGGAGTGGTGGTCAACTTGGGGCACGCCTGCTACACACATACCGCAATCTTTTAAATCATTTACAGATCTTTGATTTGGATGAAGAGGCACCAGATCAGGTTTTATCTAAACTTCTGGGACATCTAGAAAGACTGAAAGCTGATGGCTTGAGGTTTGCAGCTGAGATTAGGGAAAATATGCGAATAATAGTTGCAGGGGGAGATGGCACTGCAGGGTGGCTGCTAGGAGTAGTCAGTGATCTCAAGCTTTCCAACCCTCCTCCAATTGCAACTGTTCCTCTAGGCACTGGAAACAATCTACCATTTTCATTTGGTTGGGGAAAGAAGAATCCTGGCACTGATCATGAATCTGTGAAGAGATTCTTGGAAAAGGTCAAGAAGGCAAAAATTATGCAAATTGACAGTTGGCATATACGCATGAGGATGCGAATTCCAGCAGAAGGTCCACTCGATCCAGTAGCACCTTTAGAACTGCCACATTCTCTTCATGCTTTCAAACGCCTTTCTCAATCGGATGTACTGAATGAGGAAGGATATCATACCTTTCGTGGAGGATTTTGGAATTACTTCAGCCTAGGCATTGATGCACAAGTATCATATGAATTTCA

Fln Alignment:

Contig2121___LRSDIERVVNISKAPTCPVIVFINSRSGGQLGARLLHTYRNLLNHLQIFDLDEEAPDQVLSKLLGHLERLKADGLRFAAEIRENMRIIVAGGDGTAGWLLGVVSDLKLSNPPPIATVPLGTGNNLPFSFGWGKKNPGTDHE-SVKRFLEKVKKAKIMQIDSWHI
Q39017_________________LRSKLKYELADLPSDARPLLVFINKKSGAQRGDSLRQRLHLHLNPVQVFELSSVQGPEV--------------GLFLFRKV-PHFRVLVCGGDGTAGWVLDAIEKQNFISPPAVAILPAGTGNDLSRVLNWGGGLGSVERQGGLSTVLQNIEHAAVTVLDRWKV

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
327	20		80		0.995493
330	80			20	0.995493
358			85	14	0.993533
361	85			14	0.993533
386		57		42	1.0
431	42	57			1.0
444	50	50			1.0
457	11			88	0.923564
459		88	11		0.923564
460	88			11	0.923564
485	55		44		1.0
670	25			75	0.996473
671	25			75	0.996473
672		75		25	0.996473
673		75	25		0.996473
752	27		72		1.0
845		60		40	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain