SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene2119

Length: 408 nt

UniGene Fasta

>biog3_v1.0_unigene2119
AATGTGATGTGTTATTTCAAATTATACGACTTGTTAATGAGAAGAAGGACCACATACCTCCTGTATTAAATACCGACGTGGTATCTTTTCCTTATGAGATTACTATCCCAAGCACATCCGATTCTTCATTTGGTATGGATATGTTCAAAAGAATGCTTCAGACTGGCCATCCAAGCATGCTTAGTTGATGAATAATGATCAGTGGGCTCCACCCATTGTACAGCTGTTATGTGTTAAATATAATGGCAACGACGGAACATTGAAGAATTAATTTGCATAGCTTAACTGTAAATATTGTTGGCAACATTGATGTTATGATTCACATGTTCATACTTCGAGGCTGTTGGAAAATGGGGCTTGAAGTTTGTAGGTGCTTTTATTTGCCAGGCTATGTGTTGTAAAATGAAA

Ace file of the UniGene biog3_v1.0_unigene2119

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene809	5/5

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF1649 domain containing protein	-	-	2.00386e-43	36%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%
Blast2go	uncharacterized protein	-	-	0.0	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	81%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	81%
Blast2go	ATP binding	GO:0005524	Molecular Function	81%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	81%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 9	IPR001701	-	-
Sma3	Six-hairpin glycosidase	IPR012341	-	-
Sma3	Autophagy-related protein 1010	IPR012445	-	-
Sma3	Glycoside hydrolase, family 9, active site	IPR018221	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A858

Fln msg: your sequence is shorter than subject: 62 - 218

Fln protein: CDVLFQIIRLVNEKKDHIPPVLNTDVVSFPYEITIPSTSDSSFGMDMFKRMLQTGHPSMLS*

Protein Length: 63

Fln nts: AATGTGATGTGTTATTTCAAATTATACGACTTGTTAATGAGAAGAAGGACCACATACCTCCTGTATTAAATACCGACGTGGTATCTTTTCCTTATGAGATTACTATCCCAAGCACATCCGATTCTTCATTTGGTATGGATATGTTCAAAAGAATGCTTCAGACTGGCCATCCAAGCATGCTTAGTTGA___TGAATAATGATCAGTGGGCTCCACCCATTGTACAGCTGTTATGTGTTAAATATAATGGCAACGACGGAACATTGAAGAATTAATTTGCATAGCTTAACTGTAAATATTGTTGGCAACATTGATGTTATGATTCACATGTTCATACTTCGAGGCTGTTGGAAAATGGGGCTTGAAGTTTGTAGGTGCTTTTATTTGCCAGGCTATGTGTTGTAAAATGAAA

Fln Alignment:

Contig2119___DVLFQIIRLVNEKKDHIPPVLNTDVVSFPYEITIPSTSDSSFGMDMFKRMLQTGHPSMLS
D5A858_________________DVLFQIIRLVNEKKDHIPPVSNPAVISFPYEITIPSTSDSSFGMDMFKRMLQTGHPGMLS

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
203	20		80		0.995493
205			80	20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain