SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene2053

Length: 852 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene2053 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene27901	5/5

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Xpo1 domain containing protein	-	-	6.0e-14	23%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	55%
Blast2go	transportin-3-like isoform 1	-	-	0.0	70%

Source	InterPros	Term	Type	Identity
Sma3	Importin-beta, N-terminal	IPR001494	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Exportin-1/Importin-beta-like	IPR013598	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D7SHZ2

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 528 aas, your sequence is shorter than subject: 282 - 960

Fln protein: M*LVSSAEVSFGLLASCLSFKELHEQVLDAFASWLRLSHGIPAATLASHSLVLAAISGLNSEQLFDAAVNAICELIRYTVYGSPGGLAGQMPLVQVLVPQVMGLRSRFSASLKVALMEKEGNQGGESGIDQSAYMEDDEIVKGMARLFAEMGDSYVELIASGSAESMMIVDALVEVTSHPEYDISSMTFNFWHSLQTILTKRECYCSFGNEAAIDSEMERRLTIFRPRFELLVSLVSFRVMYPQNHEDLSKEDISDFKRTRYAVGDILMDAFFSSGWRNYS*

Protein Length: 283

Fln nts: AATGTAGCTTGTTTCATCCGCAGAGGTTTCTTTTGGTTTGCTGGCTTCTTGTTTGAGTTTTAAAGAGCTGCATGAACAGGTTTTGGATGCTTTTGCATCCTGGCTAAGACTGAGCCATGGGATACCCGCTGCCACCCTTGCTTCTCATTCGTTGGTCCTTGCAGCTATTTCTGGTTTGAACTCAGAGCAACTTTTTGATGCAGCAGTGAATGCCATTTGTGAATTGATTCGTTACACAGTGTATGGAAGTCCTGGTGGCCTTGCAGGGCAAATGCCACTGGTTCAGGTTCTTGTGCCCCAAGTCATGGGACTCAGGAGTCGTTTTTCGGCTTCATTAAAGGTTGCTCTCATGGAAAAAGAAGGTAATCAAGGAGGAGAATCTGGAATAGATCAATCTGCTTATATGGAGGATGACGAGATTGTGAAGGGAATGGCTCGCTTGTTTGCAGAAATGGGGGATTCTTATGTTGAGTTGATTGCAAGTGGTTCGGCTGAATCCATGATGATTGTTGACGCTCTGGTGGAAGTTACATCTCACCCGGAATATGACATTTCTTCAATGACATTCAACTTTTGGCATAGTCTCCAAACTATTCTGACAAAAAGGGAATGTTATTGTTCTTTCGGAAATGAAGCAGCTATTGACTCTGAAATGGAGAGGAGATTGACCATTTTCCGTCCAAGATTTGAGTTATTAGTATCACTGGTTAGTTTTAGAGTAATGTATCCCCAAAATCATGAAGACTTGTCGAAGGAGGATATTAGTGATTTCAAACGGACAAGATATGCCGTGGGGGACATTTTGATGGATGCTTTCTTCAGTTCTGGGTGGAGAAACTACTCTTAAGATTC

Fln Alignment:

Contig2053___LVSSAEVSFGLLASCLSFKELHEQVLDAFASWLRLSHGIPAATLASHSLVLAAISGLNSEQLFDAAVNAICELIRYTVYGSPGGLAXXXXXXXXXXXXXXXLRSRFSASLKVALMEKEGNQGGESGIDQSAYMEDDEIVKGMARLFAEMGDSYVELIASGSAESMMIVDALVEVTSHPEYDISSMTFNFWHSLQTILTKRECYCSFGNEAAIDSEMERRLTIFRPRFELLVSLVSFRVMYPQNHEDLSKEDISDFKRTRYAVGDILMDA
D7SHZ2_________________LTSEMEVALNILTACLNINELKEQVLEAFASWLRLRHGIPGAVLASHPLVLTALSSLNSELLSEASVNVVSELIHYTTAGSSGG-----------------------ASVQIPLIQVIVPQVMNLKVQLRDSSKDEEDVKAIGRLFADMGDSYVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHNLQVNLTKRDAYLSFGNEASIEAERNRRLQVFRSSYESLVSLVSSRVRYPEDYQDLSYEDLKDFKQTRYAVADVLIDA

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain