SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene2030

Length: 470 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene2030
GCAAGCAATAGAGACAATCGTCAAGCAGAGATATATACAAAAGGAGAAGGCCATTGGTCCAGAAGGTGATATGATAGTTTATGAACTTGCTGAGAGAGCTTTGGATGACACTGTTAATGGCAGGCTTAAAGAATCTATAACACAGATCGTCAATCAGGGCATTCCTATGGCTGAGCCTTCTGAAGCATAACAGAGGTTAAGTTAAAATGAATTTTGTCCCTTTGCAAACAAGTTACAGTTATCTACTTCCAAGGATTTTGCATTCCTTTCCTCGAAGTTTGATGAAATTGTTGTGGTTTGCACAGAAGTGGTTGTAAGATATTGTACCACATATGTTGTTGAGCAAGCTTATATTGTCATCTTCATACCCTTGTAAGCAAAGCAATTATATCTAGCTACACCACTTTAAATTTGAAAGAACACGACGGTAATAATTGGAATATGTAATGGTATGACAACTGGTGTACATT

Ace file of the UniGene biog3_v1.0_unigene2030 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2512	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	NON-SMC ELEMENT 3-like protein [Arabidopsis thaliana] gb\|AAN86181.1\| putative MAGE protein [Arabidopsis thaliana] dbj\|BAH19687.1\| AT1G34770 [Arabidopsis thaliana] gb\|AEE31737.1\| NON-SMC ELEMENT 3-like protein [Arabidopsis thaliana]	-	-	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	83%
Blast2go	melanoma-associated antigen	-	-	75%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on ester bonds, Phosphoric diester hydrolases.	EC:3.1.4.-	-	0.0	75%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Ether lipid metabolism	00565		0.0	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	primary metabolic process	GO:0044238	Biological Process	0.0	75%
Blast2go	phosphoric diester hydrolase activity	GO:0008081	Molecular Function	0.0	75%

Source	InterPros	Term	Type	e value	Identity
Sma3	MAGE protein	IPR002190	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NTZ4

Fln msg: your sequence is shorter than subject: 63 - 240

Fln protein: QAIETIVKQRYIQKEKAIGPEGDMIVYELAERALDDTVNGRLKESITQIVNQGIPMAEPSEA*

Protein Length: 64

Fln nts: GCAAGCAATAGAGACAATCGTCAAGCAGAGATATATACAAAAGGAGAAGGCCATTGGTCCAGAAGGTGATATGATAGTTTATGAACTTGCTGAGAGAGCTTTGGATGACACTGTTAATGGCAGGCTTAAAGAATCTATAACACAGATCGTCAATCAGGGCATTCCTATGGCTGAGCCTTCTGAAGCATAA___CAGAGGTTAAGTTAAAATGAATTTTGTCCCTTTGCAAACAAGTTACAGTTATCTACTTCCAAGGATTTTGCATTCCTTTCCTCGAAGTTTGATGAAATTGTTGTGGTTTGCACAGAAGTGGTTGTAAGATATTGTACCACATATGTTGTTGAGCAAGCTTATATTGTCATCTTCATACCCTTGTAAGCAAAGCAATTATATCTAGCTACACCACTTTAAATTTGAAAGAACACGACGGTAATAATTGGAATATGTAATGGTATGACAACTGGTGTACATT

Fln Alignment:

Contig2030___QAIETIVKQRYIQKEKAIGPEGDMIVYELAERALDDTVNGRLKESITQIVNQGIPMAEPSEA
A9NTZ4_________________QAIETIIKQRYIQKDKVIGPEGDVIVYELAERALDEIVNGRLKESITQIVKQDIPTTEPSEA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain