SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene2021

Length: 2663 nt

UniGene Fasta

>biog3_v1.0_unigene2021
ATGAACAGTAATTTTATAGACATTCAAGAGGCTATTTGCTGATCATATTGCCATGGAACCATCAAGAGATGTTCAAGAGGCCAGTTTCAGACACCAGGTTTTAGCAGAGCAGCCAGCAATGGAGGAAAGTAGTGGAGCAGGGGATCAAGTAATAAGAGAAGTGGTTTCAATCCCACAGACCCCAAAGGGCAGTGCCACTCCCAATGGCACACGTTCCCCTCACCATAGCAATCATGTGTCCACGGCACAGTCCTACGCAATAACACCTGCCGGAACTCGGCCTGCTTCAGCATTGGCATCTCCTTCTATGTCAAGGTCTCCTCTACTCAAAACACCGAAGACCCCCAGGACTCCTAGAACTCCTAGGACTCCATGGACCCCCTCACTCAGTCCAATTGGGACTCCGATGAGGAGGGTGCTGACAAATATGAAGGCTTATCTGGAAGATATGGGTCATATCACAAAGTTAAATCCTCAGGATGCTTGGTTACCCATCACAGAATCTAGAAATGGAAATGCTTACTATTCGGCTTTCCATAATCTCAATGCTGGCATTGGGTTCCAGGCCTTGGTTCTGCCCGTGTCTTTCACATTTTTGGGATGGACATGGGGAATCATCTCTCTCTTGGCAGCATATATATGGCAACTGTATACTTTATGGCTTCTGATTAGATTACATGAATCTGTGCCGGGGAAACGATACAACCGATATGTGGAGCTTGCTAAAGCTGCTTTTGGTGAGAAGCTGGGTGCCTGGCTTTCCATTTTTCCGACCCTTTATCTATCAGCAGGCACTGCAACAGCTTTAATCATCGTTGGTGGGGGGTCAATGAAGCTATTTTTCCAAATAGTTTGTGGCACAATTTGTCAATCCAATCCACTAACAACAATTGAGTGGTATTTGGTATTTGCATGCTTTGCGCTTGTTCTCTCTCAACTGCCAAATCTCAACTCCATTGCATGGCTTTCCTTGATTGGAGCAATAACTGCTGTGACCTACACTACACTCATTTGGGGTTTGTCAGTAAGCAAGCCCAGGCCAATGGGCATCTCTTATGACCCACTCAAGTTGAAATCTGATGCTGCAACAAACTTTGCAATCTTGAATGCATTGGGTGCTATAACTTTTGCCTTCAGAGGCCACAATCTCGTCCTTGAGATTCAGGCCACAATGCCATCAAGCCTCAAACATCCAGCGCATGTACCAATGTGGAGAGGAGCTAAGGCTGCTTATGTATTGATTGCTCTCTGTTTGTTCCCTCTTGCAATAGGAGGATACTGGGCCTATGGCAACATGATACCTCAAGGAGGAATTTTAAATGCTTTATATGGATTCCACAATCAAGATATAGCACGGGGACTTCTGGGCCTAACGTTTCTTCTCGTTGTCATCAATTGCCTAAGCAGCTTTCAAATTTACTCCATGCCCATGTTTGACCTTGCTGAAGCAGGATACATCAACTCGACCAACAAACCCTGTCCTCAGTGGCTTCGTTCTGGGTTTCGTATTGTATATGTGTTCTTTGCCTTCTTTGTTGGAATTGCACTTCCCTTCCTTACAAGCTTAGCTGGTTTGTTAGGAGGGATTACACTGCCAGTGACCTTTGTGTACCCTTGTTTCATGTGGTTATTCCTCAAGAAGCCTGAAAAATACAGTGCTAACTGGTATTTAAATTGGGGACTCGGGATATTTGGCTCTATATTGAGCATAGCATTTTCAGTTGGGGGGATTTGGAGTATTGTTGACAATGGCTTAAAGCTTAAGTTCTTCAAGCCAAGCTAACTATCGAGGAGGTTCCATCTTCAATCCATTGGATTTCCAAGATTCAGCCATAATATCATAGGTTTCTATGTTTTCTTTTGACTTGTCATTCTAGGTGATAAGAGTCCATATAAGACTGCAGGCATTATGCAGTAGACACAGTTAATATGTATGCCAATGCTTGTTCTATGTAGAAGCATGGTGTGCATCCTAGGCAAAATGTTTAGTGGGCTTTCCCAATTCAAACGCAAGGTTTGGGATGCAAGCTTCCAAGTTGTTGTGTCAACATCATCCCCCTCCCCATTACTAACACCACTTAATTGGTCTGTTTGAGTGTATCCCTTTAGATTTGTAGTTACTTTACTTGTGGTTATGATGCAAGAAGGAAGGAGGGGTATCCATTCCCACCATTGTATGTTCCCTTGCTCTAACTATGCACATTGCTTAATAGCCCATAGCTTTGAGGGCACCTGATAGCAATCGTTGAAGACCCTAGTCTCTTTTGTGTGTCTAGTCTTGTGTGTTTCCTGTGTACATAACATGGTGAATTTGGGATGGAAGCCCAGCACAACCTAAAATGGCTAATGTCTTAACCTCTTAATCAGGCCACAAGTCTGCTTGTTTTGTGTTTTTGTTTCTAAACTATATGGATATTGCTCGGTGTTCTAGTTCTGATGTAATTTTGGTTTGGTGAGTAAGGAATGAGTTATTGTTGATCTGAATATTCATATTGAGCATGGAGCAGCTAGTTCCCTAATTATAGAGGAGAAACACAAGAGAACAAGAGGAGATTATTGTGCTGAGGATATCCTTATGCCTAAATATTGTGAAGTGTTGGTGTTATTAATTTTGGGTCAATTTATAAGGATCATCATTTTCCACATGGAGGAGAGCAAATCCT

Ace file of the UniGene biog3_v1.0_unigene2021

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene200	111/112

Source	Descriptions	Term	Type	Identity
AutoFact	Lysine histidine transporter-like 8 n=5 Tax=rosids RepID=LHTL8_ARATH	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	27%
Blast2go	lysine histidine transporter-like 8	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	amino acid transport	GO:0006865	Biological Process	78%
Blast2go	amino acid transmembrane transporter activity	GO:0015171	Molecular Function	78%
Blast2go	integral to membrane	GO:0016021	Cellular Component	78%
Blast2go	plasma membrane	GO:0005886	Cellular Component	78%

Source	InterPros	Term	Type	e value	Identity
Sma3	Amino acid transporter, transmembrane	IPR013057	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQS2

Fln msg: your sequence is longer than subject: 577 - 492

Fln protein: MEPSRDVQEASFRHQVLAEQPAMEESSGAGDQVIREVVSIPQTPKGSATPNGTRSPHHSNHVSTAQSYAITPAGTRPASALASPSMSRSPLLKTPKTPRTPRTPRTPWTPSLSPIGTPMRRVLTNMKAYLEDMGHITKLNPQDAWLPITESRNGNAYYSAFHNLNAGIGFQALVLPVSFTFLGWTWGIISLLAAYIWQLYTLWLLIRLHESVPGKRYNRYVELAKAAFGEKLGAWLSIFPTLYLSAGTATALIIVGGGSMKLFFQIVCGTICQSNPLTTIEWYLVFACFALVLSQLPNLNSIAWLSLIGAITAVTYTTLIWGLSVSKPRPMGISYDPLKLKSDAATNFAILNALGAITFAFRGHNLVLEIQATMPSSLKHPAHVPMWRGAKAAYVLIALCLFPLAIGGYWAYGNMIPQGGILNALYGFHNQDIARGLLGLTFLLVVINCLSSFQIYSMPMFDLAEAGYINSTNKPCPQWLRSGFRIVYVFFAFFVGIALPFLTSLAGLLGGITLPVTFVYPCFMWLFLKKPEKYSANWYLNWGLGIFGSILSIAFSVGGIWSIVDNGLKLKFFKPS*

Protein Length: 578

Fln nts: ATGAACAGTAATTTTATAGACATTCAAGAGGCTATTTGCTGATCATATTGCC_-_ATGGAACCATCAAGAGATGTTCAAGAGGCCAGTTTCAGACACCAGGTTTTAGCAGAGCAGCCAGCAATGGAGGAAAGTAGTGGAGCAGGGGATCAAGTAATAAGAGAAGTGGTTTCAATCCCACAGACCCCAAAGGGCAGTGCCACTCCCAATGGCACACGTTCCCCTCACCATAGCAATCATGTGTCCACGGCACAGTCCTACGCAATAACACCTGCCGGAACTCGGCCTGCTTCAGCATTGGCATCTCCTTCTATGTCAAGGTCTCCTCTACTCAAAACACCGAAGACCCCCAGGACTCCTAGAACTCCTAGGACTCCATGGACCCCCTCACTCAGTCCAATTGGGACTCCGATGAGGAGGGTGCTGACAAATATGAAGGCTTATCTGGAAGATATGGGTCATATCACAAAGTTAAATCCTCAGGATGCTTGGTTACCCATCACAGAATCTAGAAATGGAAATGCTTACTATTCGGCTTTCCATAATCTCAATGCTGGCATTGGGTTCCAGGCCTTGGTTCTGCCCGTGTCTTTCACATTTTTGGGATGGACATGGGGAATCATCTCTCTCTTGGCAGCATATATATGGCAACTGTATACTTTATGGCTTCTGATTAGATTACATGAATCTGTGCCGGGGAAACGATACAACCGATATGTGGAGCTTGCTAAAGCTGCTTTTGGTGAGAAGCTGGGTGCCTGGCTTTCCATTTTTCCGACCCTTTATCTATCAGCAGGCACTGCAACAGCTTTAATCATCGTTGGTGGGGGGTCAATGAAGCTATTTTTCCAAATAGTTTGTGGCACAATTTGTCAATCCAATCCACTAACAACAATTGAGTGGTATTTGGTATTTGCATGCTTTGCGCTTGTTCTCTCTCAACTGCCAAATCTCAACTCCATTGCATGGCTTTCCTTGATTGGAGCAATAACTGCTGTGACCTACACTACACTCATTTGGGGTTTGTCAGTAAGCAAGCCCAGGCCAATGGGCATCTCTTATGACCCACTCAAGTTGAAATCTGATGCTGCAACAAACTTTGCAATCTTGAATGCATTGGGTGCTATAACTTTTGCCTTCAGAGGCCACAATCTCGTCCTTGAGATTCAGGCCACAATGCCATCAAGCCTCAAACATCCAGCGCATGTACCAATGTGGAGAGGAGCTAAGGCTGCTTATGTATTGATTGCTCTCTGTTTGTTCCCTCTTGCAATAGGAGGATACTGGGCCTATGGCAACATGATACCTCAAGGAGGAATTTTAAATGCTTTATATGGATTCCACAATCAAGATATAGCACGGGGACTTCTGGGCCTAACGTTTCTTCTCGTTGTCATCAATTGCCTAAGCAGCTTTCAAATTTACTCCATGCCCATGTTTGACCTTGCTGAAGCAGGATACATCAACTCGACCAACAAACCCTGTCCTCAGTGGCTTCGTTCTGGGTTTCGTATTGTATATGTGTTCTTTGCCTTCTTTGTTGGAATTGCACTTCCCTTCCTTACAAGCTTAGCTGGTTTGTTAGGAGGGATTACACTGCCAGTGACCTTTGTGTACCCTTGTTTCATGTGGTTATTCCTCAAGAAGCCTGAAAAATACAGTGCTAACTGGTATTTAAATTGGGGACTCGGGATATTTGGCTCTATATTGAGCATAGCATTTTCAGTTGGGGGGATTTGGAGTATTGTTGACAATGGCTTAAAGCTTAAGTTCTTCAAGCCAAGCTAA___CTATCGAGGAGGTTCCATCTTCAATCCATTGGATTTCCAAGATTCAGCCATAATATCATAGGTTTCTATGTTTTCTTTTGACTTGTCATTCTAGGTGATAAGAGTCCATATAAGACTGCAGGCATTATGCAGTAGACACAGTTAATATGTATGCCAATGCTTGTTCTATGTAGAAGCATGGTGTGCATCCTAGGCAAAATGTTTAGTGGGCTTTCCCAATTCAAACGCAAGGTTTGGGATGCAAGCTTCCAAGTTGTTGTGTCAACATCATCCCCCTCCCCATTACTAACACCACTTAATTGGTCTGTTTGAGTGTATCCCTTTAGATTTGTAGTTACTTTACTTGTGGTTATGATGCAAGAAGGAAGGAGGGGTATCCATTCCCACCATTGTATGTTCCCTTGCTCTAACTATGCACATTGCTTAATAGCCCATAGCTTTGAGGGCACCTGATAGCAATCGTTGAAGACCCTAGTCTCTTTTGTGTGTCTAGTCTTGTGTGTTTCCTGTGTACATAACATGGTGAATTTGGGATGGAAGCCCAGCACAACCTAAAATGGCTAATGTCTTAACCTCTTAATCAGGCCACAAGTCTGCTTGTTTTGTGTTTTTGTTTCTAAACTATATGGATATTGCTCGGTGTTCTAGTTCTGATGTAATTTTGGTTTGGTGAGTAAGGAATGAGTTATTGTTGATCTGAATATTCATATTGAGCATGGAGCAGCTAGTTCCCTAATTATAGAGGAGAAACACAAGAGAACAAGAGGAGATTATTGTGCTGAGGATATCCTTATGCCTAAATATTGTGAAGTGTTGGTGTTATTAATTTTGGGTCAATTTATAAGGATCATCATTTTCCACATGGAGGAGAGCAAATCCT

Fln Alignment:

Contig2021___RNGNAYYSAFHNLNAGIGFQALVLPVSFTFLGWTWGIISLLAAYIWQLYTLWLLIRLHES---VPGKRYNRYVELAKAAFGEKLGAWLSIFPTLYLSAGTATALIIVGGGSMKLFFQIVC----GTICQSNPLTTIEWYLVFACFALVLSQLPNLNSIAWLSLIGAITAVTYTTLIWGLSVSKPRP-------MGISYDPLKLKSDAATNFAILNALGAITFAFRGHNLVLEIQATMPSSLKHPAHVPMWRGAKAAYVLIALCLFPLA-IGGYWAYGNMIPQGGILNALYGFHNQDIARGLLGLTFLLVVINCLSSFQIYSMPMFDLAE---------AGYIN-STNKPCPQW-------LRSGFRIVYVFFAFFVGIALPFLTSLAGLLGGITL-PVTFVYPCFMWLFLKKPEKYSANWYLNWGLGIFGSILSIAFSVGGIWSIVDNGLKLKFFKP
B8LQS2_________________RTGTLWTASAHIITAVIGSGVLSLAWSMAQLGWIAGPAVLIAFSFITLYTSALLADCYRSLDPVNGKRNYNYMAAVKANLGG-LQTWLCGFTQYSNLYGTAIGYTITASTSMAAINRSDCFHSKGKNYPCHPSNN-PFMIMFGIVQLILSQIPDFDQLWWLSIVAAVMSFSYSSIGLGLSIGKVAEGNFHGTLTGVTVGTI---TGAQKVWQTFQALGDIAFAYSYSMILIEIQDTLRSP---PAENKTMKKATVLGVSVTTLFYTLSGCFGYAAFGNSAP-GNLLTG-FGFYN---PFWLVDFANACVVVHLVGAYQVFVQPLFAFIEEWCSHKWPRSQFIHKSYNINIPGYGLYKANLFRLVWRTCFVISTTLISMLLPFFNDVVGILGAVGFWPLTVYFPVEMYIAQKKIRRFTTKWMLLQTLSVVSFIVSLAAAAGSIEGIIQD---LKSYKP

SNPs (tot: 46)

Position	A %	C %	G %	T %	Probability
226	33			66	0.997452
227	66			33	0.997452
229		66		33	0.997452
360		66		33	1.0
361			33	66	1.0
362		66		33	1.0
538		12		87	0.992554
540	87			12	0.992554
686	28		71		1.0
687		28		71	1.0
688	28		71		1.0
689		60		40	1.0
690		60		40	1.0
765	20			80	0.995493
766	20			80	0.995493
768			20	80	0.995493
774	12	87			0.992554
775		87		12	0.992554
776		87	12		0.992554
895	16		83		0.999991
968	10			90	0.90298
970	16	83			0.999991
1054			12	87	0.992554
1055			12	87	0.992554
1056	87		12		0.992554
1064		75		12	0.975346
1317	10			90	0.90298
1525	12			87	0.999964
1566		87		12	0.999964
1594		86		13	0.999973
1646	10	90			0.90298
1648			88	11	0.923564
1714	11		88		0.923564
1767	12		87		0.992554
1769			12	87	0.992554
1770		87		12	0.992554
2003	10	90			0.90298
2004	90	10			0.90298
2017	77			22	0.999999
2018			77	22	0.999999
2147	75			25	0.996473
2148			75	25	0.996473
2461	25		75		0.996473
2464	75			25	0.996473
2466			75	25	0.996473
2471		25	75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain