SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene2012

Length: 1471 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene2012 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2998	34/34

Source	Descriptions	Term	Type	Identity
AutoFact	putative receptor protein kinase [Arabidopsis thaliana] dbj\|BAB09644.1\| protein kinase-like protein [Arabidopsis thaliana] gb\|AAL91617.1\| AT5g59010/k19m22_210 [Arabidopsis thaliana] gb\|ABH04487.1\| At5g59010 [Arabidopsis thaliana] gb\|AED97129.1\| putative r	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	70%
Blast2go	protein	-	-	86%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	86%
Blast2go	receptor activity	GO:0004872	Molecular Function	86%
Blast2go	protein kinase activity	GO:0004672	Molecular Function	86%
Blast2go	ATP binding	GO:0005524	Molecular Function	86%
Blast2go	plasma membrane	GO:0005886	Cellular Component	86%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A9S6

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 22 aas, your sequence is shorter than subject: 370 - 487

Fln protein: AWQFLEEARAVGQLRHERLVNLIGCCCDGDERLLVAEYMPNDTLAKHLFHWEVQPMQWAMRLRVALHLAQALEYCSSKGRALYHDLNAYRVLFDQDGNPRLSCFGLMKNSRDGKSYSTNLAFTPPEYLRTGRITSESVIYSFGTLLLDLLSGKHIPPSHALDLIRGRNFLLLMDSCLEGDFSNDDGTELVRLASRCLQYEPRERPNAKSLVAALSSLQKQTEVASYVLMGITREDADQTLVLSPLGDACSRMDLTAIHEILEKVGYKDDEGTTNELSFQMWTKQMQETLNSKKQGDSAFRAKDFVTAIDCYTQFIEVGTMVSPTVLARRSLSYLMSDMPREALGDAMQAQVVYPEWPTAFYLQASALSF*

Protein Length: 371

Fln nts: GCATGGCAGTTTCTGGAGGAAGCAAGAGCTGTGGGTCAACTTCGCCACGAGAGATTGGTGAATTTAATAGGATGCTGTTGCGATGGTGATGAGCGTTTGCTTGTGGCTGAATATATGCCAAATGACACTCTAGCAAAGCATCTCTTCCATTGGGAGGTGCAACCTATGCAGTGGGCAATGCGCTTGAGGGTTGCACTTCACTTGGCACAAGCATTAGAATATTGTAGCAGCAAAGGCAGAGCTCTCTATCATGACCTTAATGCTTATAGAGTTCTGTTTGACCAGGATGGCAATCCCAGGCTTTCATGCTTTGGTCTGATGAAGAACAGTAGAGATGGGAAAAGTTATAGCACAAATTTGGCTTTTACTCCTCCAGAGTACCTGAGAACTGGAAGAATAACATCTGAAAGTGTAATCTATAGTTTTGGTACACTTCTGCTGGATCTCTTAAGTGGAAAGCATATTCCACCAAGTCATGCCCTTGATCTCATAAGAGGTAGGAACTTTTTGCTGCTGATGGACTCTTGTCTAGAAGGTGATTTCTCTAATGATGATGGAACTGAACTGGTACGTTTGGCTTCACGTTGCTTACAATATGAACCTCGTGAGAGGCCAAATGCAAAATCTCTTGTGGCGGCACTTTCTTCGCTTCAGAAACAGACAGAGGTTGCATCATATGTCTTGATGGGGATAACAAGGGAAGATGCTGACCAGACACTCGTTTTATCTCCACTTGGTGATGCATGTTCTAGAATGGATCTCACTGCTATACATGAAATATTGGAAAAAGTTGGATACAAGGATGATGAAGGAACAACTAATGAGCTGTCATTTCAAATGTGGACGAAACAAATGCAGGAGACTCTGAACTCAAAGAAACAGGGAGATTCTGCATTTCGAGCAAAAGATTTCGTAACTGCAATTGATTGTTATACCCAGTTCATTGAGGTTGGAACCATGGTGTCACCCACAGTCCTTGCAAGACGTAGTTTGTCTTACCTTATGAGTGACATGCCACGGGAAGCTCTTGGTGATGCAATGCAAGCTCAAGTTGTGTACCCAGAATGGCCAACAGCATTTTATCTTCAAGCTTCTGCCCTTTCTTTTTAG___GAATGAAACGTGATGCCCAAGAAATGCTGAAGGATGGTGCAGCAATTGAAGCAAAATAAAGTATGATATCTGGATGGTGAGTAATGATCAGAATTAGAGATGCGGGATAATCAAAATCCATGCATCTGTTTCTATTGTGTATGCTGATTGCATGTAGCTTGTCAAGCTGCCCACATGATTGCTGCTGAATGCACAGCATAATATATCTTGATTGCCCTCAGATGGTGAAATGAAATCATTGATTGCAACCAGGTTACAGCAGTATGGAAGTCTTGTTTGCGGCCACCAAGGGATTTATATGAGTGAGTCAAATACTTAAATCAGAGTATTCTGGCATTCTGATGGTGTGAAATTTGGCTGA

Fln Alignment:

Contig2012___AWQFLEEARAVGQLRHERLVNLIGCCCDGDERLLVAEYMPNDTLAKHLFHWEVQPMQWAMRLRVALHLAQALEYCSSKGRALYHDLNAYRVLFDQDGNPRLSCFGLMKNSRDGKSYSTNLAFTPPEYLRTGRITSESVIYSFGTLLLDLLSGKHIPPSHALDLIRGRNFLLLMDSCLEGDFSNDDGTELVRLASRCLQYEPRERPNAKSLVAALSSLQKQTEVASYVLMGITREDADQTLVLSPLGDACSRMDLTAIHEILEKVGYKDDEGTTNELSFQMWTKQMQETLNSKKQGDSAFRAKDFVTAIDCYTQFIEVGTMVSPTVLARRSLSYLMSDMPREALGDAMQAQVVYPEWPTAFYLQASALS
D5A9S6_________________ARQFAAEAAGVGRVRHKRLVNLIGFCSEADERLLVAEFMPYDTLSKHLFHWEKQPMPWAMRLRVAYYIAQALDHCNSENHRIYHDLNTYRVLFDEDGDPRLSSFGLMKNSRDGKSYSTNLAYTPPEFLRTGRVTPESVIYSYGTVLLDLLSGKHIPPSHALDLIRGKNVLVLMDSSLDGQYANEDATELVGLASRCLQSEPRDRPNAKFLVTALAPLQMQIEVPSDVLMGITKVTASLPVMLSPLGKACARMDLTAVHDVLVKTGYKDDEGAENELSFQEWTQQVQEMLNMKKCGDIAFRDKDFKTAIEYYSKLVNVMTIPSPTVFARRSLAYLMSDQPQLALRDAMQAQVCQPEWPTAFYMQAISLA

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
171	14	85			0.993533
174			14	85	0.993533
175		85		14	0.993533
199	11		88		0.923564
201		88	11		0.923564
202	88			11	0.923564
222	88			11	0.923564
350	33			66	0.997452
351		66		33	0.997452
352	66		33		0.997452
353		66		33	0.997452
384	20	80			0.995493
385	20			80	0.995493
389	80			20	0.995493
485		83		16	0.994512
538	37		62		1.0
578	85	14			0.993533
581			85	14	0.993533
698		14		85	0.993533
859	20			80	0.995493
957	85			14	0.993533
979		85		14	0.993533
1055	83			16	0.994512
1056	83			16	0.994512
1088	20	80			0.995493
1336			66	33	0.997452
1337	66		33		0.997452
1338			66	33	0.997452
1373			85	14	0.993533
1374		85		14	0.993533
1383	80	20			0.995493
1385		80		20	0.995493
1386			80	20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain