SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene1992

Length: 1163 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene1992

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene21662	21/21

Source	Descriptions	Term	Type	Identity
AutoFact	ribosome biogenesis regulatory protein-like protein [Arabidopsis thaliana] sp\|Q9SH88.2\|RRS1_ARATH RecName: Full=Ribosome biogenesis regulatory protein homolog dbj\|BAE98464.1\| hypothetical protein [Arabidopsis thaliana] gb\|AEC09475.1\| ribosome biogenesis r	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	ribosome biogenesis regulatory protein	-	-	76%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleolus	GO:0005730	Cellular Component	0.0	76%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal biogenesis regulatory protein	IPR007023	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLV5

Fln msg: Separated hits, possible frame ERROR between 366 and 368, your sequence is shorter than subject: 314 - 343

Fln protein: KSSQEELVKECLEKGTRLVQALADKLFSLPSTPDKEGPLVQLPTPTTPIPREKPLPRAKPPTKWEIFAQSKGIKKRKRSKHLYDEQSGEWKRRHGYNRAGDENDIPIIEAKPTDEPGEDPFxxRKKTEKKTRIQKNEKSQLENLKNAAKVGALPSTVQLAATSLPITGTKDTPKKIGKDDLGHAAGFASSATASVGKFDERLPGEKIPKHPGKHRKFLPVVEGSGIGSREKQQCEKVLQKVLSSHNHDILNVDKAVKVFTVNEERKTHQKRNGKPAHQKRKDKPAHQKRKDRPANKKHGDRPADQKRKDRRKS*

Protein Length: 315

Fln nts: AAGTCTTCCCAGGAAGAGCTTGTGAAAGAATGCCTTGAGAAAGGCACTAGGCTTGTGCAGGCGCTTGCAGATAAGCTTTTTAGCTTACCCTCAACTCCTGATAAAGAGGGTCCGCTTGTTCAATTGCCAACTCCAACGACTCCAATTCCTCGTGAAAAGCCTCTTCCAAGAGCCAAGCCTCCAACAAAGTGGGAAATTTTTGCCCAGTCAAAAGGCATCAAAAAGCGCAAAAGAAGCAAACATTTATATGATGAACAGTCTGGAGAATGGAAACGCCGTCATGGTTATAATCGGGCTGGAGATGAAAATGATATTCCAATCATTGAAGCAAAACCAACTGATGAACCTGGTGAGGATCCTTTTAGxxxACGGAAAAAAACGGAAAAGAAAACAAGGATTCAGAAGAATGAGAAGAGTCAGCTAGAGAATCTAAAAAACGCAGCAAAAGTTGGTGCTCTGCCAAGTACTGTGCAACTAGCAGCAACAAGTTTGCCTATAACAGGGACAAAGGATACCCCTAAGAAAATTGGCAAAGATGATTTAGGCCATGCAGCGGGCTTTGCAAGCTCTGCAACTGCTAGTGTTGGCAAATTCGATGAAAGGCTTCCTGGTGAAAAAATTCCAAAGCACCCTGGCAAACATCGGAAGTTTCTACCAGTTGTGGAAGGATCAGGGATTGGCAGTAGGGAAAAACAACAATGTGAAAAAGTTCTTCAAAAAGTGCTTTCTAGTCATAATCACGATATACTTAATGTGGACAAGGCTGTTAAAGTCTTCACTGTTAATGAAGAAAGAAAAACCCATCAGAAACGCAATGGAAAACCTGCACATCAGAAACGCAAGGACAAACCAGCACATCAGAAACGTAAGGACAGACCTGCAAATAAGAAACATGGTGACAGACCTGCAGATCAGAAACGGAAGGACAGACGTAAGTCCTAAAAGGTTTACATCAAGCAACCTGGGTGAGAAGTGGTCCAAGTCCCTTTGGCGTTGATTGTCCTCCAGACAAGATAGCTACTATTGCTAATGTAACTAATTTCATTTTTATGCCCTGGACCTTTGTATTTTCCGAGTGACCAACTCACTTGTATCAACTTTTAATTAAGCTCAGTTTTCATTCCTTAAGATCATTAATTATAATAGAGTTGCCTCTGTAGACATT

Fln Alignment:

Contig1992___SSQEELVKECLEKGTRLVQALADKLFSLPSTPDKEGPLVQLPTPTTPIPREKPLPRAKPPTKWEIFAQSKGIKKRKRSKHLYDEQSGEWKRRHGYNRAGDENDIPIIEAKPTDEPGEDPFSxRKKTEKKTRIQKNEKSQLENLKNAAKVGALPSTVQLAATSLPITGTKDTPKKIGKDDLGHAAGFASSATASVGKFDERLPGEKIPKHPGKHRKFLPVVEGSGIGSREKQQCEKVLQKVLSSHNHDILNVDKAVKVFTVNEERKTHQKRNGKPAHQKRKDKPAHQKRKDRPANKKHGDRPADQ
B8LLV5_________________SSEEELVKECLEKGTRLVQAIADKLFSLPSTPDKEGPLVQLPTPTTPIPREKPLPKAKPPTKWEVFAQSKGIKKRKRSKHLYDEPSGEWKRRHGYNRAGDENDIPIIEAKPTDEPGEDPFSxKKKTEKKARVQKNEKSQLENLKKAAKVGALPSTVQLAATSLPITGTRDIPKKVGKDDLGHAAGFASSATASVGKFDERLPGEKTPKHPGKHRKFLPVVEGSGIGSREKQQCEKVLQKVLSSHNHDILNVDKAVKVFTVNEERNAHQKRKDRPAHQNRKDRPAHQKLKKRPAHQKHGDRPAHQ

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
310	16		83		0.994512
313	83		16		0.994512
507	80	20			0.995493
509	20		60	20	0.99255
510		20	60	20	0.99255
513	75			25	0.996473
535			75	25	0.996473
536	75		25		0.996473
925			80	20	0.995493
927	80			20	0.995493
1022	16	83			0.994512
1024	83		16		0.994512
1111	20	80			0.995493
1115			80	20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain