SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene1936

Length: 330 nt

UniGene Fasta

>biog3_v1.0_unigene1936
GCAGATACTACGGATGGAATTGATGGAGAGTTTGGAAGCCAAAGATGAAGGTTGATGTGGTTCCCAACCTTGTGCAGTTGCTACAGAAGGATAATATCACAAAGTAAATGCTATATATGTCTTGATGCTTTTCTGGTATGTATTCTACACGGCCTTTACTGCAACAACTGCAATAACTGAATGGAGTGGTCAACTGTATTCTATCATCTATACTGCATTGCCGACAATAGTAGTGGGTATTTGGGATCAAGACCTGAGTGACAAGGTTTTAATTGGTTTCCCTCAACTGTATGGGTCTGGGCAGAGGGAGGAAAATTATAATCCTACATT

Ace file of the UniGene biog3_v1.0_unigene1936

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1324	2/3

Source	Descriptions	Term	Type	Identity
AutoFact	ATPase [Arabidopsis thaliana]	-	-	49%
FL-Next	sp=Phospholipid-transporting ATPase 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	62%
Blast2go	phospholipid-transporting atpase 1-like	-	-	78%

Source	ECs	Term	Type	e value	Identity
Blast2go	Phospholipid-translocating ATPase.	EC:3.6.3.1	-	0.0	78%

Source	GOs	Term	Type	Identity
Blast2go	ATP biosynthetic process	GO:0006754	Biological Process	78%
Blast2go	phospholipid transport	GO:0015914	Biological Process	78%
Blast2go	ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	GO:0015662	Molecular Function	78%
Blast2go	ATP binding	GO:0005524	Molecular Function	78%
Blast2go	magnesium ion binding	GO:0000287	Molecular Function	78%
Blast2go	phospholipid-translocating ATPase activity	GO:0004012	Molecular Function	78%
Blast2go	mitochondrion	GO:0005739	Cellular Component	78%
Blast2go	integral to membrane	GO:0016021	Cellular Component	78%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter	IPR001757	-	-
Sma3	DNA-binding WRKY	IPR003657	-	-
Sma3	Haloacid dehalogenase-like hydrolase	IPR005834	-	-
Sma3	ATPase, P-type cation exchange, alpha subunit	IPR006069	-	-
Sma3	ATPase, P-type, phospholipid-translocating, flippase	IPR006539	-	-
Sma3	ATPase, P-type, ATPase-associated domain	IPR008250	-	-
Sma3	HAD superfamily hydrolase-like, type 3	IPR013200	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Somatotropin hormone, conserved site	IPR018116	-	-
Sma3	ATPase, P-type phosphorylation site	IPR018303	-	-
Sma3	Formate C-acetyltransferase glycine radical, conserved site	IPR019777	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: P98204

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 160 aas, your sequence is shorter than subject: 109 - 1158

Fln protein: QILRMELMESLEAKDEG*CGSQPCAVATEG*YHKVNAIYVLMLFWYVFYTAFTATTAITEWSGQLYSIIYTALPTIVVGIWDQDLSDKVLIGFPQLYGSGQREENYNPT

Protein Length: 110

Fln nts: GCAGATACTACGGATGGAATTGATGGAGAGTTTGGAAGCCAAAGATGAAGGTTGATGTGGTTCCCAACCTTGTGCAGTTGCTACAGAAGGATAATATCACAAAGTAAATGCTATATATGTCTTGATGCTTTTCTGGTATGTATTCTACACGGCCTTTACTGCAACAACTGCAATAACTGAATGGAGTGGTCAACTGTATTCTATCATCTATACTGCATTGCCGACAATAGTAGTGGGTATTTGGGATCAAGACCTGAGTGACAAGGTTTTAATTGGTTTCCCTCAACTGTATGGGTCTGGGCAGAGGGAGGAAAATTATAATCCTACATT

Fln Alignment:

Contig1936___NAIYVLMLFWYVFYXXXXXXXXXXEWSGQLYSIIYTALPTIVVGIWDQDLSDKVLIGFPQLYGSGQREENYNPT
P98204_________________NAVFVLILFWYVLFTCYTLTTAITEWSSVLYSVIYTAIPTIIIGILDKDLGRQTLLDHPQLYGVGQRAEGYSTT

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
102	50	50			1.0
103	50			50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain