SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene1920

Length: 1482 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene1920 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene22357	46/47

Source	Descriptions	Term	Type	e value	Identity
AutoFact	biotin/lipoyl attachment domain-containing protein [Arabidopsis thaliana] gb\|AAK55674.1\|AF378871_1 AT3g56130/F18O21_90 [Arabidopsis thaliana] gb\|AAK91481.1\| AT3g56130/F18O21_90 [Arabidopsis thaliana] gb\|AEE79481.1\| biotin/lipoyl attachment domain-containi	-	-	4.0e-32	37%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Blast2go	protein	-	-	0.0	61%

Source	InterPros	Term	Type	e value	Identity
Sma3	Biotin/lipoyl attachment	IPR000089	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NN96

Fln msg:

Fln protein: MTLRMSGGSRKSWIEAEQEATMAASCPHSPFYCSLETSTRAQGLLEKGVVRYLHYGFSYRSFPRMNSGDSFRSKCRTLSNPGRTKVWLSTNFKASHATFAMASDGDAIESGSLGELEKENQNGALFPDGIESFITEVCDETDIAEIKLKAGSFAMHIRRNIEKSKRPSSVASPLPAPPIPGEPMIDSDPTVTLPSSSPTPKDPPTRSFNPFTAKLPMSKTSKFGLLEAAGDEGLCFVTAPKVGIFKRSRVVKGRNGRPLCEEGQSIKEGQVVCYLDQLGGQTPIISEVSGEVVKILWSEGEPVGYGDPLIAVLPSFHGIK*

Protein Length: 322

Fln nts: AATGTTCCTTCATCGGCCTCTTATTAGTGTTC_-_ATGACTCTCAGAATGTCTGGAGGAAGCAGAAAATCTTGGATTGAAGCAGAGCAGGAAGCGACCATGGCAGCTTCATGCCCTCACAGCCCCTTCTACTGTTCACTGGAAACATCTACACGAGCTCAGGGTTTGCTTGAGAAAGGGGTTGTGAGGTATCTGCATTATGGCTTCTCTTACAGATCCTTTCCAAGGATGAACAGTGGGGATTCATTTAGAAGCAAGTGCAGAACACTTTCCAACCCAGGGAGAACCAAAGTTTGGCTTTCAACCAATTTCAAGGCTTCTCACGCTACATTTGCTATGGCTTCTGATGGGGATGCGATAGAGAGTGGTTCCCTGGGAGAATTAGAAAAAGAAAATCAAAATGGTGCATTGTTTCCTGATGGCATTGAGTCTTTCATAACGGAGGTCTGTGACGAGACAGACATTGCTGAGATCAAACTCAAGGCTGGAAGCTTTGCAATGCACATACGCCGGAATATAGAGAAGAGCAAAAGACCATCTTCTGTGGCATCCCCATTGCCTGCTCCTCCTATCCCAGGTGAACCAATGATTGACTCTGATCCCACAGTTACTCTGCCATCTTCTTCACCAACACCAAAAGATCCTCCTACTAGGTCTTTCAACCCATTTACAGCAAAACTACCAATGTCCAAAACATCAAAGTTCGGGCTTTTGGAGGCTGCTGGTGATGAAGGCTTGTGTTTTGTAACTGCTCCAAAGGTTGGCATCTTCAAAAGGAGCCGAGTTGTGAAGGGAAGGAATGGAAGACCACTTTGTGAAGAGGGACAATCCATAAAAGAAGGGCAGGTTGTATGTTATTTGGATCAGCTTGGTGGCCAGACACCTATCATATCAGAAGTGTCAGGAGAAGTTGTCAAGATCTTATGGAGCGAAGGAGAGCCTGTTGGATATGGTGATCCTCTCATTGCTGTTCTACCTTCATTCCATGGTATCAAATGA___TTATATGTTTATAGTGGATTTTATGAGTAAAGCAGTGTACATTTACTTCACTGCCTCAGAATCAGTCTTTTCTAGGGCACGCCTTGTGTTGACCAACGAACGATAGAAGAGTGTGAGGCTCCAAATTAAGAAGGAAGTTTCTCACTTGAGTTGGAATTTGGTGTTCTGTTCTCATTCATTTTTAGTTGGCATGCATTTATTTTTTGGATTCACAGTTCAGCGAATTGACCTTATAACAAGTCCTTTTTGCCTGGTTAAATTTCATTTACAGTTTTCTACATTTTGCTATTAACAAATGAGGCATTGCGATTTGAAGAAATCTGAAGAATATTGTTGAACAATCCATAATGATGTGATATTACAAAATGTAATTACTCATTTGCAATGAATATCGTATTAGTAGTAGCATTTGGGTAGTTCAGTGTCTTACCATGGAATGCTTTATTAAAGATTATGGTTATGAGGCATTGCGATTTGAAGAAACATT

Fln Alignment:

Contig1920___MAASCPHSPFYCSLETSTRAQGLLEKGVVRYLHYGFSYRSFPRMNSGDSFRSKCRTLSNPGRTKVWLSTNFKASHATFAMASDGDAIESGSLGELEKENQNGALFPDGIESFITEVCDETDIAEIKLKAGSFAMHIRRNIEKSKRXXXXXXXXXXXXXXXXPMIDXXXXXXXXXXXXXXXXXXTRSFNPFTAKLPMSKTSKFGLLEAAGDEGLCFVTAPKVGIFKRSRVVKGRNGRPLCEEGQSIKEGQVVCYLDQLGGQTPIISEVSGEVVKILWSEGEPVGYGDPLIAVLPSFHGIK
A9NN96_________________MAASCPYSPFHCSLGTSTQAQGLLEKGVVRNLHYGFSYRSLPRMDSGDSFRNKRGTLSNAGRSKVWLSSNVKASHATFAMASDKDALESGSLGELEKGNQNGALFPDGIESFITEVCDETDIAEIKLKAGSFAMHIRRNIEKSKRPSSVASPLTAPPVPSEPMVDFDHTVTPPPSSPAPKAPPTRSFNPFTTKLSLSKTSKFGLLEAAGDEGLCFVTAPKVGLFKRSRVVKGRNGRPLCEEGQSIKEGQVVCFLDQLGGQTPVTSEVSGEIVKILWSDGEPVGYGDPLIAVLPSFRGIK

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
141	33			66	0.997452
145			66	33	0.997452
248	14	85			0.993533
250			14	85	0.993533
251			85	14	0.993533
340	14	85			0.993533
341	85	14			0.993533
343			85	14	0.993533
482		85		14	0.993533
483	85		14		0.993533
486	12			87	0.992554
487	87			12	0.992554
488	87		12		0.992554
510	75	25			1.0
511	25		75		1.0
512			75	25	1.0
556	16			83	0.994512
557	16	83			0.994512
558			83	16	0.994512
559		83	16		0.994512
590	12	87			0.992554
591	12			87	0.992554
593		87	12		0.992554
1046	14	85			0.993533
1048	14		85		0.993533
1053	16		83		0.994512
1173	25	75			0.996473
1174	25			75	0.996473
1243	85	14			0.993533
1246			85	14	0.993533
1445			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain