SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene1915

Length: 1827 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene1915

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9797	71/71

Source	Descriptions	Term	Type	e value	Identity
AutoFact	zinc finger protein [Aeluropus littoralis]	-	-	4.0e-38	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Blast2go	protein	-	-	0.0	66%

Source	GOs	Term	Type	e value	Identity
Blast2go	zinc ion binding	GO:0008270	Molecular Function	0.0	66%
Blast2go	DNA binding	GO:0003677	Molecular Function	0.0	66%

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, A20-type	IPR002653	-	0.0	-
Sma3	Zinc finger, AN1-type	IPR000058	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUS5

Fln msg:

Fln protein: MAQENWKSDGEGTGSQPQEDPILCANNCGFFGSSSTMNFCSKCFRDLVLKPAEALSAAAMVEMSSGSALGLQQPVQIADQLARPATLEQGEGTSSGEQPKPPANRCTYCKKRVGLTGFKCRCGDIFCSLHRYSETHDCLFDYRKAGRETIRKENPVVKAEKIDKI*

Protein Length: 167

Fln nts: AATGTATTGTCAGGCGGCAGCTCATTGGAGCGGCCTCTGAGCGAATCAGTTTTTCAAACGAAGGAAATCATTGGGCTTTGTGTTTATCGGAATGAAACGTGTAAGTGGTTGATTTTTTGCAATGTAAACAAAAGAAATTTAGCTCAAACTTAGCTTCTTTCCGTTGAAATTCGAAGATAGAGCTTATTGTAGGGTTTGTTTCTGGAACCAATTTGTGTTGAATTCGAAGAGAAACCTTGTTATAGCGTGAATCTAAGGGTGATTCTATATCTGTGAGAAATCTTGAGTAGAGACCGTTTATCACGAGGCTGATTTTGTTATATAGCATGAATTGTGATTTTTAAACGGTCAGATTGAAGTGGGAGGATGAAATTTGCCTTTGAATAGATAAGTTAAAGCCTGAAATGCCGTATTCAGAAAGAAAGTCGCGCCGAAAAATCTTAAATTCTTTGACTGATTTGTATTGCTAAGATAATTCGCTATTTAAGCGGTCAAATTCTGTCGTGGAGAAAAATATTATGTTTCTAACCGTCAGATTTAGTCGCGGGTTCAAGTATAGCTTGGTATTCAAGCTGTAAATTGGCCCTGCTTTATGCTTGGAAGGGTTTTATTACACACCATGACCCCCCCGTGCTGCACTTAAGACAGTGACGGCGCAGCTATTTGTAGTTCTAAGCTCCGATCTAGCTGTTGAAGGCTGAAAATTGCAAAGATTTATATTGGAATATATCTCTAAAGA_-_ATGGCTCAGGAGAACTGGAAAAGCGACGGCGAAGGGACCGGCAGCCAGCCTCAAGAAGATCCCATCCTTTGCGCTAATAATTGTGGATTTTTCGGAAGTTCTTCGACAATGAACTTTTGTTCTAAATGTTTCAGAGATCTTGTGCTAAAGCCGGCAGAAGCTCTCTCTGCTGCTGCAATGGTGGAGATGTCTTCTGGTAGTGCTTTAGGTCTTCAGCAGCCTGTGCAAATAGCAGATCAGTTGGCGAGGCCAGCAACTCTTGAGCAAGGAGAAGGGACCTCTTCAGGAGAGCAGCCAAAACCTCCTGCTAACCGATGTACTTACTGCAAGAAACGTGTTGGACTGACGGGCTTTAAGTGTCGCTGTGGCGATATTTTTTGCTCTCTGCACCGTTATTCTGAAACACATGACTGCTTGTTTGATTATCGAAAGGCTGGGCGTGAGACTATCAGAAAAGAAAATCCTGTAGTGAAAGCTGAAAAAATTGATAAGATTTGA___CGAGACTTTGGAGAGTGCTGTAGAGGTCACTGGAAAGAGAACATAATCCTGGACACTGAAGCTTCCTTATTTTGCAGTAGAAACCAAGACGCTTGAGGTCTCAAAGAACAGATTGCTCTGTTGAATATCAAGAAGTATGAAGAACAGGTAATTACTATTTTTGTTCCAGTACACTAAAATAATGGTATCTTTTTTTTGCAATTAATGCTGAATATGAAACCTGCCAAACTCGCTGAATTTATAATCTAGTGCTCCATGCCTGCTGGGGGTTTGAACCCGGGTCATTAACATGGCTGTGGTCTAATGATGGTATCTTTTATCACTTGGATCTGTTACAAGCCATTATCTATGATGCTGCGGAGGTTATTCCTATCCTTGATCATCTTGGATTGATCTTGTATGGTTGGATTTTTCCTTTATGCTCTGTTCAGGACCTATTCCTGGCATGGCTATATTGGGATAAGCTCGGACCTTTATTTAATTCTGTATGTTTGGTGTATACTTCAAGCTTCTAGATAGTAGAAAGCAACTTTGTGCCAAACAAGATTGCGAATTCAAGTATTTACTTCATATGTAAAACATGAAACATT

Fln Alignment:

Contig1915___MAQENWKSDGEGTGSQPQEDPILCANNCGFFGSSSTMNFCSKCFRDLVLKPAEALSAAAMVEMSSGSALGLQQPVQIADQLARPATLEQGEGTSSGEQPKPPANRCTYCKKRVGLTGFKCRCGDIFCSLHRYSETHDCLFDYRKAGRETIRKENPVVKAEKIDKI
A9NUS5_________________MAQDNWKGDSEGTGYQPQEDPILCANSCGFFGSSSTMNFCSKCFKDLVLK--QALSAA-VVEISSGSALGLQQPVQIADQLARPATLEQGEGTSSGEQPKPPANRCTYCKKRVGLTGFKCRCGDTFCSLHRYSETHDCLFDYRKAGRETIRKENPVVKAEKIDKI

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
1787	33			66	0.997452
1788		33	66		0.997452
1789	33	66			0.997452
1790			66	33	0.997452
1791	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain