SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene1913

Length: 891 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene1913

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8119	23/23

Source	Descriptions	Term	Type	Identity
AutoFact	FAD/NAD(P)-binding oxidoreductase family protein [Arabidopsis thaliana] emb\|CAB88427.1\| putative protein [Arabidopsis thaliana] gb\|AAM61214.1\| unknown [Arabidopsis thaliana] gb\|AAN72037.1\| putative protein [Arabidopsis thaliana] gb\|AAP37810.1\| At3g44190 [	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	61%
Blast2go	apoptosis-inducing factor homolog a-like	-	-	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	electron carrier activity	GO:0009055	Molecular Function	0.0	73%
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	73%

Source	InterPros	Term	Type	Identity
Sma3	Pyridine nucleotide-disulphide oxidoreductase, class-II	IPR000103	-	-
Sma3	Pyridine nucleotide-disulphide oxidoreductase, NAD-binding domain	IPR001327	-	-
Sma3	FAD-dependent pyridine nucleotide-disulphide oxidoreductase	IPR013027	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: A5C5M6

Fln msg: your sequence is shorter than subject: 265 - 365

Fln protein: IRYDYLVIGTGSKFNGPSTKEERLKQFEAEHEKITNASRILIIGGGPTGVELAAEIKVDFPDKKVIIIHAGHRLINFLGEKASQKALDWLVSKKIEVHLNERIDLESLSESNNTYTTSSGMAISADCHFVFVGNRVASSWLQESVFKDSVDKDGRLKVDDCLRLRGKTNVFAVGDIVDVKEIKQGFLAERHATVVAANIKKLILNSKHKLTTYKAGSTMAMVSLGRNVAVAQLPFGTTIGCIPGRIKSRDLFVGKTRKGLGLTP*

Protein Length: 266

Fln nts: ACATTCGTTATGATTACCTGGTGATTGGAACTGGGAGCAAATTTAATGGGCCTTCCACAAAGGAAGAAAGGCTCAAACAGTTTGAAGCAGAGCACGAGAAGATAACGAATGCGAGCAGAATTTTGATCATCGGCGGGGGACCAACTGGGGTTGAGTTAGCTGCAGAAATCAAAGTAGATTTCCCTGATAAGAAGGTAATTATCATACATGCAGGTCACAGACTTATAAACTTTCTTGGAGAAAAGGCTTCACAGAAAGCTTTGGATTGGTTAGTTTCCAAAAAGATTGAGGTGCACCTGAATGAACGCATTGATTTGGAAAGCCTCTCGGAATCAAACAACACATATACCACATCAAGTGGAATGGCTATCTCTGCAGATTGTCATTTCGTGTTTGTGGGAAACCGTGTTGCCTCCTCTTGGCTTCAAGAATCCGTTTTCAAAGACTCTGTTGATAAGGATGGGCGCCTGAAAGTTGATGATTGTCTGCGATTAAGAGGGAAAACCAACGTCTTTGCAGTCGGAGATATTGTGGATGTTAAGGAAATCAAGCAAGGCTTCCTTGCTGAGAGGCATGCAACGGTGGTGGCGGCCAATATTAAGAAGTTGATACTGAATTCTAAGCACAAATTAACTACATACAAGGCTGGCTCAACAATGGCAATGGTATCTCTGGGGAGAAATGTTGCAGTTGCTCAGCTGCCATTTGGAACAACAATCGGTTGCATCCCAGGAAGGATAAAGTCCAGAGATTTGTTTGTCGGAAAAACTCGTAAAGGGTTGGGGTTGACGCCATAG___ATATAAGCTTGTTGGGTCATATTTCATTAGCAACCTGGTATTGTTTCCATGTAGCAGCTGATTTATCCGTCTATGTTGAGGCCTTGTGCGATTT

Fln Alignment:

Contig1913___IRYDYLVIGTGSKFNGPSTKEERLKQFEAEHEKITNASRILIIGGGPTGVELAAEIKVDFPDKKVIIIHAGHRLINFLGEKASQKALDWLVSKKIEVHLNERIDLESLSESNNTYTTSSGMAISADCHFVFVGNRVASSWLQESVFKDSVDKDGRLKVDDCLRLRGKTNVFAVGDIVDVKEIKQGFLAERHATVVAANIKKLILNSKH-KLTTYKAGSTMAMVSLGRNVAVAQLPFGTTIGCIPGRIKSRDLFVGKTRKGLGLTP
A5C5M6_________________IAYDYLVIATGHLDHVPKTRTERLKQYQAESEKIKSANSILIVGGGPTGVELAGEIVVDFPDKKVTLVHRGSRLLEFIGAKASKKALDWLTSKKVEVLLNQSVDINTASD--GTYQTSGGETIXADCHFVCTGKPIGSSWLKDTILKDNLDGHGKLVVDDNLRVRGLKNVFAIGDITAIPEIQQGYLAQRHAVVAAKNIKMLMSGEKETKLATYKPGSAIAIVSLGRRDAVAQLPFATICGCIPGMIKSRDLFVGKTRKQMGLKP

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
192	80			20	0.995493
273		12	87		0.992554
274	12			87	0.992554
393	14			85	0.993533
394	14			85	0.993533
429	14		85		0.993533
430	85	14			0.993533
433		85		14	0.993533
468	14	85			0.993533
470			85	14	0.993533
514	16			83	0.994512
559	14			85	0.993533
561	12	87			0.992554
599	14			85	0.993533
600	85	14			0.993533
602			85	14	0.993533
603	85			14	0.993533
708	16		83		0.994512
709		16	83		0.994512
711	83			16	0.994512
712		83		16	0.994512
773	25		75		0.996473
775	75			25	0.996473
886	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain