SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene1890

Length: 522 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene1890
AATGTTGCAAGTGTTCTACGGTCCATGGAATCATCACATTACTATCCTGAGAACCATATAGCTGTTGCACGAGGGAAAGGGTACAATGTTATAATGACAACCAGTCTCTCGTCAGATGTACCTGTAGGTTATTTTTCATGGGCTGAATATGATATTATGGCACCTATTCAGCCAAAGACTGAAAAGGCCCTTGCAGCTGCTTTCATTTCCAATTGTGGAGCTCATAACTTTCGTCTACAGGCACTTGAACAGCTTCAGAAGCTCAATGTCCCAGTTGATTCTTATGGTGGTTGTCATCGAAATCGAGATGGCAGGGTGAACAAAGTAGAGGCTCTGAAGCGTTATAAATTCAGCCTAGCCTTTGAAAATTCTAATGAAGAGGACTATGTCACGGAGAAATTCTTCCAGTCCCTAGTTGCAGGTGCAATCCCTGTGGTGGTAGGAGTTCCCAATATTCAAGACTATGCACCTGCTCCAAATGCAATTATACATATTAAGACCATAGCTGAAATTAGTTACATT

Ace file of the UniGene biog3_v1.0_unigene1890 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9241	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	alpha 1,3 fucosyltransferase [Populus tremula x Populus alba]	-	-	61%
FL-Next	sp=Putative fucosyltransferase-like protein; Arabidopsis thaliana (Mouse-ear cress).	-	-	75%
Blast2go	glycoprotein 3-alpha-l-fucosyltransferase a	-	-	76%

Source	ECs	Term	Type	e value	Identity
Blast2go	4-galactosyl-N-acetylglucosaminide 3-alpha-L-fucosyltransferase.	EC:2.4.1.152	-	0.0	76%

Source	KEGGs	Term	Type	Identity
Blast2go	Other types of O-glycan biosynthesis	00514		76%
Blast2go	Glycosphingolipid biosynthesis - lacto and neolacto series	00601		76%
Blast2go	Glycosphingolipid biosynthesis - globo series	00603		76%
Blast2go	Metabolic pathways	01100		76%
Blast2go	Glycoprotein 3-alpha-L-fucosyltransferase.	EC:2.4.1.214	-	76%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Various types of N-glycan biosynthesis	00513		0.0	76%

Source	GOs	Term	Type	Identity
Blast2go	L-fucose catabolic process	GO:0042355	Biological Process	76%
Blast2go	protein N-linked glycosylation	GO:0006487	Biological Process	76%
Blast2go	4-galactosyl-N-acetylglucosaminide 3-alpha-L-fucosyltransferase activity	GO:0017083	Molecular Function	76%
Blast2go	glycoprotein 3-alpha-L-fucosyltransferase activity	GO:0018392	Molecular Function	76%
Blast2go	Golgi cisterna membrane	GO:0032580	Cellular Component	76%
Blast2go	mitochondrion	GO:0005739	Cellular Component	76%
Blast2go	integral to membrane	GO:0016021	Cellular Component	76%

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycosyl transferase, family 10	IPR001503	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9FX97

Fln msg: Distance to subject end: 180 aas, your sequence is shorter than subject: 174 - 513

Fln protein: NVASVLRSMESSHYYPENHIAVARGKGYNVIMTTSLSSDVPVGYFSWAEYDIMAPIQPKTEKALAAAFISNCGAHNFRLQALEQLQKLNVPVDSYGGCHRNRDGRVNKVEALKRYKFSLAFENSNEEDYVTEKFFQSLVAGAIPVVVGVPNIQDYAPAPNAIIHIKTIAEISYI

Protein Length: 175

Fln nts: AATGTTGCAAGTGTTCTACGGTCCATGGAATCATCACATTACTATCCTGAGAACCATATAGCTGTTGCACGAGGGAAAGGGTACAATGTTATAATGACAACCAGTCTCTCGTCAGATGTACCTGTAGGTTATTTTTCATGGGCTGAATATGATATTATGGCACCTATTCAGCCAAAGACTGAAAAGGCCCTTGCAGCTGCTTTCATTTCCAATTGTGGAGCTCATAACTTTCGTCTACAGGCACTTGAACAGCTTCAGAAGCTCAATGTCCCAGTTGATTCTTATGGTGGTTGTCATCGAAATCGAGATGGCAGGGTGAACAAAGTAGAGGCTCTGAAGCGTTATAAATTCAGCCTAGCCTTTGAAAATTCTAATGAAGAGGACTATGTCACGGAGAAATTCTTCCAGTCCCTAGTTGCAGGTGCAATCCCTGTGGTGGTAGGAGTTCCCAATATTCAAGACTATGCACCTGCTCCAAATGCAATTATACATATTAAGACCATAGCTGAAATTAGTTACATT

Fln Alignment:

Contig1890___SVLRSMESSHYYPENHIAVARGKGYNVIMTTSLSSDVPVGYFSWAEYDIMAPIQPKTEKALAAAFISNCGAHNFRLQALEQLQKLNVPVDSYGGCHRNRDGRVNKVEALKRYKFSLAFENSNEEDYVTEKFFQSLXXXXXXXXXXXXXIQDYAPAPNAIIHIKTIAEI
Q9FX97_________________SIIRSMESAQYYPENDLAQARRRGYDIVMTTSLSSDVPVGYFSWAEYDIMSPVQPKTERAIAAAFISNCGARNFRLQALEALMKTNIKIDSYGGCHRNRDGKVDKVEALKRYKFSLAFENTNEEDYVTEKFFQSLVAGSVPVVVGPPNIEEFAPASDSFLHIKTMEDV

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
212		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain