SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene1777

Length: 481 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene1777
AAAGGGACAAGATTGAGGTGGAACTTTTGCCACTGTACAAGGATTATGGGTTGGGGTTGACAACCTACAGTCCTTTGGCATCTGGATTGCTGAGTGGAAAGTACAGTAAAGATAACATACCATCCGACAGCCGTTTTGCTCTGAAAGGGTATCAGCATATCAAGGATTACTCATTGGTTGATGACAATCTGCGCAAAATAGACGAGTTAAAATCCATTGCGGAAGAACTAGGTGTGTCTTTGCCTCAATTAGCTATTGCTTGGTGTGCTGCAAATCCCAATGTGAGCACTGTGCTTACTGGTGCAACCAAGGAAAGTCAGATAAAAGAGAATATGAAGGCCCTAAAAGTGATCCCATTGTTGACTCCAGAAATTATGGAGAAGATCGATGCTGTGATGACAAACAAACCATTACAATGAATCCGTCATGCAATATTTATTATTGATTTTGAAATTCATAGGCACTTGGAAACAAATACATT

Ace file of the UniGene biog3_v1.0_unigene1777 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4808	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	putative beta-subunit of K+ channels [Solanum tuberosum]	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	69%
Blast2go	potassium channel beta subunit	-	-	85%

Source	ECs	Term	Type	e value	Identity
Blast2go	Aryl-alcohol dehydrogenase (NADP(+)).	EC:1.1.1.91	-	0.0	85%

Source	GOs	Term	Type	Identity
Blast2go	transmembrane transport	GO:0055085	Biological Process	85%
Blast2go	potassium ion transport	GO:0006813	Biological Process	85%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	85%
Blast2go	voltage-gated potassium channel activity	GO:0005249	Molecular Function	85%
Blast2go	aryl-alcohol dehydrogenase (NADP+) activity	GO:0047681	Molecular Function	85%
Blast2go	plasma membrane	GO:0005886	Cellular Component	85%
Blast2go	integral to membrane	GO:0016021	Cellular Component	85%
Blast2go	mitochondrion	GO:0005739	Cellular Component	85%

Source	InterPros	Term	Type	Identity
Sma3	Aldo/keto reductase	IPR001395	-	-
Sma3	Opsin	IPR001760	-	-
Sma3	Potassium channel, voltage-dependent, beta subunit, KCNAB-related	IPR005399	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NK94

Fln msg: your sequence is shorter than subject: 139 - 334

Fln protein: RDKIEVELLPLYKDYGLGLTTYSPLASGLLSGKYSKDNIPSDSRFALKGYQHIKDYSLVDDNLRKIDELKSIAEELGVSLPQLAIAWCAANPNVSTVLTGATKESQIKENMKALKVIPLLTPEIMEKIDAVMTNKPLQ*

Protein Length: 140

Fln nts: AAAGGGACAAGATTGAGGTGGAACTTTTGCCACTGTACAAGGATTATGGGTTGGGGTTGACAACCTACAGTCCTTTGGCATCTGGATTGCTGAGTGGAAAGTACAGTAAAGATAACATACCATCCGACAGCCGTTTTGCTCTGAAAGGGTATCAGCATATCAAGGATTACTCATTGGTTGATGACAATCTGCGCAAAATAGACGAGTTAAAATCCATTGCGGAAGAACTAGGTGTGTCTTTGCCTCAATTAGCTATTGCTTGGTGTGCTGCAAATCCCAATGTGAGCACTGTGCTTACTGGTGCAACCAAGGAAAGTCAGATAAAAGAGAATATGAAGGCCCTAAAAGTGATCCCATTGTTGACTCCAGAAATTATGGAGAAGATCGATGCTGTGATGACAAACAAACCATTACAATGA___ATCCGTCATGCAATATTTATTATTGATTTTGAAATTCATAGGCACTTGGAAACAAATACATT

Fln Alignment:

Contig1777___RDKIEVELLPLYKDYGLGLTTYSPLASGLLSGKYSKDNIPSDSRFALKGYQHIKDYSLVDDNLRKIDELKSIAEELGVSLPQLAIAWCAANPNVSTVLTGATKESQIKENMKALKVIPLLTPEIMEKIDAVMTNKP
A9NK94_________________RHKVEVEYAPLYNNYGVGLTTWSPLASGVLTGKYSKGNIPQDSRFALENYKNLASRSLVDDVLRKVDGLKPIAAELDVPLAQLAIAWCASNPNVSTVITGATKESQIHENMKALDVIPKLTPDVLERIESVIQSKP

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain