SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene1776

Length: 874 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene1776 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1828	19/19

Source	Descriptions	Term	Type	Identity
AutoFact	pescadillo-like protein [Zinnia violacea]	-	-	59%
FL-Next	sp=Pescadillo homolog; Chlamydomonas reinhardtii (Chlamydomonas smithii).	-	-	56%
Blast2go	pescadillo-like protein	-	-	76%

Source	GOs	Term	Type	Identity
Blast2go	cell proliferation	GO:0008283	Biological Process	76%
Blast2go	rRNA processing	GO:0006364	Biological Process	76%
Blast2go	transcription coactivator activity	GO:0003713	Molecular Function	76%
Blast2go	nucleolus	GO:0005730	Cellular Component	76%

Source	InterPros	Term	Type	e value	Identity
Sma3	BRCT domain	IPR001357	-	0.0	-
Sma3	Pescadillo	IPR010613	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: A8JBB2

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 319 aas, your sequence is shorter than subject: 290 - 678

Fln protein: EITRPTIISKYFVSCPRPFAR*KQAD*SFNKKIKKALAKKNKNLASRLENNRPSYTLDHIVRQRYPTFIDALRDLDDALTMMHLFAALPADKTHDIPAERVHSCRRLSLEWQAYISRTHSLRKTFVSVKGIYYQAEVEGQNITWLTPHVLQQVLPGDVDFRVMLTFVEFYETLIGFVNFKLYYAISLKYPPILDPRLEAAAAELYAIVKDLASNTVNPLQDDAAERGEEIVPSESELNNPEQKEKILAESQARLALLQHRLSSMDKERAMTNDLHQEDTAIQNKEKYDDT

Protein Length: 291

Fln nts: AGGAAATAACAAGACCTACTATCATCTCAAAGTATTTCGTTTCTTGCCCACGACCCTTTGCTCGATAAAAGCAGGCAGATTAAAGCTTTAACAAGAAGATAAAGAAAGCTTTGGCAAAGAAGAACAAAAATTTGGCCTCTCGTTTGGAGAACAATAGGCCTTCATATACTCTTGACCATATTGTGAGGCAGAGATATCCGACCTTTATTGATGCTCTTCGTGACCTGGATGATGCTCTCACAATGATGCATCTTTTTGCAGCTTTGCCCGCAGACAAGACACATGACATTCCTGCTGAGCGTGTCCACAGCTGTCGAAGATTAAGTCTGGAGTGGCAGGCCTATATTTCCAGAACACATTCTTTGCGTAAGACATTTGTGTCTGTTAAGGGCATCTACTATCAGGCAGAAGTCGAGGGTCAAAACATTACGTGGCTCACACCACATGTTCTGCAACAAGTTCTCCCCGGGGATGTTGATTTTCGTGTTATGCTGACATTTGTAGAATTTTATGAGACTCTTATAGGATTTGTGAATTTCAAACTTTATTATGCTATATCTTTAAAGTATCCACCAATACTTGATCCAAGATTGGAGGCAGCGGCAGCAGAACTGTATGCCATTGTCAAAGACCTTGCTTCAAATACTGTGAACCCGCTTCAGGACGATGCTGCTGAACGAGGGGAGGAGATTGTTCCTAGTGAATCTGAGCTAAATAATCCAGAACAGAAAGAGAAAATATTGGCAGAGTCACAGGCAAGGTTGGCATTACTTCAGCATCGGCTTTCATCGATGGACAAAGAAAGAGCTATGACTAATGATCTTCACCAAGAAGACACAGCAATTCAAAATAAAGAGAAATATGATGATACATT

Fln Alignment:

Contig1776___RLENNRPSYTLDHIVRQRYPTFIDALRDLDDALTMMHLFAALPADKTHDIPAERVHSCRRLSLEWQAYISRTHSLRKTFVSVKGIYYQAEVEGQNITWLTPHVLQQVLPGDVDFRVMLTFVEFYETLIGFVNFKLYYAI--------------SLKYPPILDPRLEAAAAELYAIVKDLASNTVNPLQDDAAERGEE
A8JBB2_________________RLAALTPTYRLDHLVKERYPSFVDALRDLDDSLTMVHLFATLPAESKYDIPQRTVQLCRRLALEWQAYVVRSGALRRVFVSVKGYYFQAEILGQSVTWLVPHALSQVLPPDVDYKVMLTFLEFYNTLLQFVNFKLYHNLGAALPSLRVYPLFSQLRYPPVLDPRLEEAAAELAAIMKDIAGMEEEEPEEVDSEAGDE

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
471	14	85			0.993533
472	14	85			0.993533
507	12			87	0.992554
509		87		12	0.992554
511		87		12	0.992554
520		12		87	0.992554
521	12		87		0.992554
666		85		14	0.993533
701		11	88		0.923564
702	11		88		0.923564
704		88		11	0.923564
754	33			66	0.997452
755		33		66	0.997452
756	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain