SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene1768

Length: 1138 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene1768 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17955	14/14

Source	Descriptions	Term	Type	Identity
AutoFact	Cinnamoyl-CoA reductase n=3 Tax=Pinaceae RepID=B3VKE9_9CONI	-	-	94%
FL-Next	tr=Cinnamoyl-CoA reductase; Pinus massoniana.	-	-	99%
Blast2go	cinnamoyl- reductase	-	-	89%

Source	InterPros	Term	Type	e value	Identity
Sma3	NAD-dependent epimerase/dehydratase	IPR001509	-	0.0	-
Sma3	NAD(P)-binding domain	IPR016040	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
202	33		66		0.997452
203		66		33	0.997452
205			66	33	0.997452
792	12		87		0.992554
794			85	14	0.993533
795		85	14		0.993533
796	85			14	0.993533
1033	33		66		0.997452
1034		33	66		0.997452
1035	33		66		0.997452
1036		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain