SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene1752

Length: 1165 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene1752 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene125	23/23

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Transcription factor, putative n=1 Tax=Ricinus communis RepID=B9RJU4_RICCO	-	-	7.0e-08	29%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%
Blast2go	conserved peptide upstream open reading frame 37	-	-	0.0	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	transcription regulator activity	GO:0030528	Molecular Function	0.0	69%
Blast2go	nucleus	GO:0005634	Cellular Component	0.0	69%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PSI6

Fln msg: your sequence is shorter than subject: 323 - 484

Fln protein: DQTRSGVRVIVHPSVMYEFPNLLHDSAKGLDKINVYNRMPERESNSEIPSVFNSTIRGGLLAYREHMTPAFIAMQGIRKRRSLSAEAAGNGFVACSGHEETGSQISCNGSSRGGYQSQSHEDTRDLEALLGSDEEEDDSTGHTPSEAITNDQLSGTQDDAHATNGIPAKKRRCECMELREQEVDFIPSAIQEKAVLNGKCSSDGVYFPPVASQESGIQLECCNIDKNSDYSDEKFCDYSTDNMTGNGSSNNSASKVGQPSSWRKSRKEKMKKAIDLFRSIVPEGRSMDTAGVLDMASQYLKSLQLRVERLEANQNDRTLTKP*

Protein Length: 324

Fln nts: GATCAGACTAGAAGCGGAGTTAGAGTCATTGTCCACCCTTCCGTTATGTACGAGTTTCCAAACCTGTTGCACGACTCTGCAAAAGGGTTGGACAAAATCAATGTCTATAATAGGATGCCCGAGAGAGAAAGCAATTCTGAAATACCTTCGGTATTTAACTCAACTATCCGGGGTGGGTTGCTGGCATACAGGGAGCATATGACTCCAGCATTCATAGCCATGCAAGGAATACGAAAGAGGAGGTCGTTGAGTGCAGAGGCTGCTGGTAACGGGTTTGTTGCTTGCTCTGGGCATGAAGAAACTGGAAGCCAAATAAGTTGTAATGGGTCAAGCAGAGGAGGTTATCAAAGTCAATCACACGAAGATACCAGAGATCTTGAAGCTCTATTGGGTTCTGATGAGGAAGAGGATGATAGCACTGGTCACACTCCAAGTGAAGCCATAACAAACGACCAGCTGAGCGGTACGCAAGACGATGCACATGCTACCAATGGAATTCCAGCTAAGAAGAGGCGATGTGAATGTATGGAACTCAGAGAACAGGAGGTTGACTTTATTCCCTCTGCTATCCAAGAGAAGGCAGTTTTGAATGGGAAATGTAGTTCAGATGGTGTTTACTTTCCACCCGTAGCAAGTCAGGAATCAGGTATTCAACTCGAATGCTGTAACATTGACAAGAATTCTGACTATAGTGATGAGAAGTTCTGTGATTATAGTACTGACAACATGACAGGAAACGGGAGCTCAAATAACAGTGCCTCTAAAGTGGGGCAACCAAGCTCATGGAGGAAGTCGAGGAAAGAGAAAATGAAAAAAGCTATAGATCTGTTTAGAAGTATTGTGCCCGAAGGACGTTCCATGGATACTGCAGGTGTTCTTGATATGGCCTCCCAGTACTTGAAATCCCTTCAACTAAGAGTCGAAAGGCTGGAAGCCAATCAGAATGATAGAACTTTGACGAAGCCTTGA___GCTCCCTGATTGATGTGGTAAATCACATAACTTCTAAGTTTTAAGCTATGTCTACAATCTCTGTTGGACACCAAAAACGTTTTCTTTTCCAGTTTGGCTGACTGTTTTTGCCGAAATAACTAGTGGAATGTGCCAAAAATAGCTGATTTGCTAAAAATATGAAGGATCAAAGCTTAAACATGTTTGTGTTTACATT

Fln Alignment:

Contig1752___DQTRSGVRVIVHPSVMYEFPNLLHDSAKGLDKINVYNRMPERESNSEIPSVFNSTIRG-GLLAYREHMTPAFIAMQGIRKRRSLSAEAAGNGFVACSGHEETGSQISCNGSSRGGYQSQSHEDTRDLEALLGSDEEEDDSTGHTPSEAITNDQLSGTQDDAHATNGIPAKKRRCECMELREQEVDFIPSAIQEKAVLNGKCSSDGVYFPPVASQESGIQLECCNIDKNSDYSDEKFCDYSTDNMTGNGSSNNSASKVGQPSSWRKSRKEKMKKAIDLFRSIVPEGRSMDTAGVLDMASQYLKSLQLRVERLEANQNDRTLTKP
C0PSI6_________________DQTGSGVRVIVHPSLVYEFPNLLPDSAKGLDKINAHNRVPQKESISQIPSVYNSTDRGTGLLAYREHMAPAFTALQGIRKRRWLSAEAAGNGFVACSKQEETGSQMSCNGSSRGGYQSQSHEDTRDLEALLGSDEEEDDSTGHTPSEAITNDQQSGTQDEAHISNGIPTKKRRCECMEFGEQEVDFIPSAIQETAVLNGKCSSDGVCFPPVASQESGIQLECCNTVKDSDYRDEQFCDYSTDNMTGNGSSNNSASKVGQPSSRRKLRKEKVKKAINLLRSIVPEGHSMDTAAVLEVASQHLKSLQLKLERLEANQNDKTLSKP

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
727	33			66	0.997452
731			66	33	0.997452
948		25		75	0.996473
951		83		16	0.994512
1132	33		66		0.997452
1133	66	33			0.997452
1135			66	33	0.997452
1136			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain